Generating and Testing DNA Sequences


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Documentation for package ‘DNAseqtest’ version 1.0

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DNAseqtest-package Generating and Testing DNA Sequences
artomat Transforming 4^K Array to m \times K Matrix
Distance Paralinear Distances
DNAseqtest Generating and Testing DNA Sequences
Fmatrix Joint Distribution for Two Matched Sequences
gn Joint Distribution for K Matched Sequences
gn2 Joint Distribution for K Matched Sequences (2)
gn3sim Generating Random DNA Samples Using the Rambaut and Grassly Method
likelihood Negative Log Likelihood Ratio
Ntml Generating Samples from a Multinomial Distribution
Pt Transition Probability Function
simapp Generating Random DNA Samples Using Approximation Method
simemb Generating Random DNA Samples Using Embedded Markov Chain
Smatrix Symmetric Matrix S
TEST2 Test for Symmetry of Matched DNA Sequences
TEST3 Overall Test for Marginal Symmetry