Generalized Linear Latent Variable Models

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Documentation for package ‘gllvm’ version 1.4.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AICc	Corrected Akaike information criterion and number of observations
AICc.gllvm	Corrected Akaike information criterion and number of observations
anova.gllvm	Analysis Of Deviance for gllvm
coefplot	Plot covariate coefficients and confidence intervals
coefplot.gllvm	Plot covariate coefficients and confidence intervals
confint	Confidence intervals for model parameters
confint.gllvm	Confidence intervals for model parameters
ecoCoefs	Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
eSpider	Hunting spider data
getLV	Extract latent variables
getLV.gllvm	Extract latent variables
getPredictErr	Extract prediction errors for latent variables from gllvm object
getPredictErr.gllvm	Extract prediction errors for latent variables from gllvm object
getResidualCor	Extract residual correlations from gllvm object
getResidualCor.gllvm	Extract residual correlations from gllvm object
getResidualCov	Extract residual covariance matrix from gllvm object
getResidualCov.gllvm	Extract residual covariance matrix from gllvm object
gllvm	Generalized Linear Latent Variable Models
logLik	Log-likelihood of gllvm
logLik.gllvm	Log-likelihood of gllvm
microbialdata	Microbial community data
nobs	Corrected Akaike information criterion and number of observations
nobs.gllvm	Corrected Akaike information criterion and number of observations
optima	Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
optima.gllvm	Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
ordiplot	Plot latent variables from gllvm model
ordiplot.gllvm	Plot latent variables from gllvm model
plot.gllvm	Plot Diagnostics for an gllvm Object
predict	Predict Method for gllvm Fits
predict.gllvm	Predict Method for gllvm Fits
predictLVs	Predict latent variables for gllvm Fits
predictLVs.gllvm	Predict latent variables for gllvm Fits
print.summary.gllvm	Summarizing gllvm model fits
randomCoefplot	Plot random slope coefficients
randomCoefplot.gllvm	Plot random slope coefficients
residuals.gllvm	Dunn-Smyth residuals for gllvm model
se	Standard errors for gllvm model
se.gllvm	Standard errors for gllvm model
simulate	Simulate data from gllvm fit
simulate.gllvm	Simulate data from gllvm fit
Skabbholmen	Skabbholmen island data
summary.gllvm	Summarizing gllvm model fits
tolerances	Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
tolerances.gllvm	Functions to extract ecological quantities of the latent variables from a GLLVM, if species are a quadratic function of the latent variables.
vcov	Returns variance-covariance matrix of coefficients in a GLLVM.
vcov.gllvm	Returns variance-covariance matrix of coefficients in a GLLVM.