genomicper-package |
Circular Genomic Permutations |
demo |
GWAS p_values demo data |
genes_permutation |
Gene-level Permutations |
genome_order |
Genome Order |
genomicper |
Circular Genomic Permutations |
get_pathways |
Pathways |
get_results |
Circular Permutation Results |
hyprbg |
Hypergeometric Test (phyper) |
plot_results |
Plot Results Circular Permutation |
read2_paths |
Read to SNPs to sets; Map SNPs to gene-sets/pathways |
read_pvals |
Read GWAS p-values of association and Merge with SNP annotations |
RHSA109582 |
Reactome Pathway examples |
RHSA1474244 |
Reactome Pathway examples |
RHSA164843 |
Reactome Pathway examples |
RHSA446343 |
Reactome Pathway examples |
RHSA8876384 |
Reactome Pathway examples |
RHSA8964572 |
Reactome Pathway examples |
RHSAXXXXX |
Reactome Pathway examples |
SNPsAnnotation |
SNPs-Genes annotation to Distance 0 (SNPs within a gene) |
snps_permutation |
SNP-level permutations |