Project GENIE BioPharma Collaborative Data Processing Pipeline

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Documentation for package ‘genieBPC’ version 1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

check_genie_access	Check Access to GENIE Data
create_analytic_cohort	Select cohort of patients for analysis
drug_regimen_list	List of Drug Regimen Names by Cohort
drug_regimen_sunburst	Visualize drug regimen sequences in a sunburst plot
genie_panels	Genomic Panels Included in GENIE BPC Data
nsclc_test_data	Simulated fake GENIE BPC data for function examples and tests
pull_data_synapse	Obtain clinical & genomic data files for GENIE BPC Project
regimen_abbreviations	List of Drug Regimen Abbreviations
select_unique_ngs	Selecting corresponding unique next generation sequencing reports
set_synapse_credentials	Connect to 'Synapse' API
synapse_tables	'Synapse' table IDs
synapse_version	Return list of available GENIE BPC data releases