An Experiment Interface for 'DeepSqueak' Bioacoustics Research

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Documentation for package ‘SqueakR’ version 1.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_timepoint_data	Add Timepoint Data
add_to_experiment	Add Scored Data to Experiment Object
analyze_factor	Analyze Factor
autosqueakRpipeline	Fully-Automatic Experiment Creation
create_experiment	Create New Experiment
deepsqueak_data	DeepSqueak Example Data
describe_experiment	Describe Experiment
plotClusters	3D Call Clusters (Custom Label) Plot
plotContours	2D Call Contours
plotCorrelations	Plot Correlation Matrix
plotDeltaHistogram	Plot Delta Frequency Histogram
plotDensitySplitByCustom	Plot Density Graph, Splitting Groups by Custom Label
plotDensitySplitByDuration	Plot Density Graph, Splitting Groups by Duration
plotDensitySplitByFrequency	Plot Density Graph, Splitting Groups by Frequency
plotDensityStackedByCustom	Plot Density Graph Stacked by Custom Labels
plotDensityStackedByDuration	Plot Density Graph Stacked by Duration
plotDensityStackedByFrequency	Plot Density Graph Stacked by Frequency
plotEthnogram	Plot Ethnogram
plotEthnogramSplitByTonality	Plot Tonality-colored Ethnogram
plotPrincipalBoxplot	Plot Principal Frequency Box-Plot
plotSummaryPDF	Export PDF
plotSunburstAnimals	Sunburst Plot for Animal Distribution
plotSunburstExperimenters	Sunburst Plot for Experimenter Distribution
plotSurface	3D Surface Plot for Call Datasets
remove_experiment_data	Remove Data from Experiment File
save_experiment	Save Experiment Locally
score_timepoint_data	Score Timepoint Data
semisqueakRpipeline	Semi-Automatic Experiment Creation
squeakrANOVA	Generate ANOVA tables for Detected Calls
squeakRDashboard	Launch SqueakR Dashboard
squeakrSummary	Summary Statistics for Experiment
unblind_all_ids	Decode Experiment IDs
unblind_data_id	Find Matching Experiment ID
unblind_data_name	Find Matching Experiment Name
update_experiment	Updates Experiment Object Metadata