Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci

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Documentation for package ‘hwde’ version 0.67-3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

decode.genotypes	Creates contrasts that relate to a single locus
hwde	Fit relevant models, and test for various types of departure from Hardy-Weinberg equilibrium. Allows only 2 alleles per locus. The number of loci is arbitrary.
hwexact	Exact test of HWE
IndianIrish	Observed genotype frequencies at MN and S loci, for 2 populations
make.contrasts	Calculate contrasts required by the function
mendelABC	Mendel's F2 trifactorial data for seed shape (A: round or wrinkled), cotyledon color (B: albumen yellow or green), and seed coat color (C: grey-brown or white)
snphwe	Exact test of HWE