An Arsenal of 'R' Functions for Large-Scale Statistical
Summaries
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Documentation for package ‘arsenal’ version 3.6.3
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A B C D F G H I K L M N O P Q R S T V W X Y misc
-- A --
| allNA | Some functions to handle NAs |
| arsenal | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries |
| arsenal-defunct | Defunct functions in 'arsenal' |
| arsenal-deprecated | Deprecated functions in 'arsenal' |
| arsenal_max | tableby Summary Statistics Functions |
| arsenal_mean | tableby Summary Statistics Functions |
| arsenal_median | tableby Summary Statistics Functions |
| arsenal_min | tableby Summary Statistics Functions |
| arsenal_range | tableby Summary Statistics Functions |
| arsenal_sd | tableby Summary Statistics Functions |
| arsenal_sum | tableby Summary Statistics Functions |
| arsenal_table | 'arsenal' tables with common structure |
| arsenal_var | tableby Summary Statistics Functions |
| as.countpct | Internal 'tableby' functions |
| as.data.frame.freqlist | as.data.frame.freqlist |
| as.data.frame.modelsum | as.data.frame.modelsum |
| as.data.frame.summary.freqlist | summary.freqlist |
| as.data.frame.summary.modelsum | Summarize a 'modelsum' object. |
| as.data.frame.summary.tableby | The summary method for a 'tableby' object |
| as.data.frame.tableby | as.data.frame.tableby |
| as.matrix.selectall | Make a column for "select all" input |
| as.selectall | Make a column for "select all" input |
| as.tbstat | Internal 'tableby' functions |
| as.tbstat_multirow | Internal 'tableby' functions |
-- B --
| binomCI | tableby Summary Statistics Functions |
-- C --
| c.yaml | Include a YAML header in 'write2' |
| clog | Family functions for modelsum |
| code.chunk | Helper functions for 'write2' |
| comparedf | Compare two data.frames and report differences |
| comparedf.control | Control settings for 'comparedf' function |
| comparedf.tolerances | 'comparedf' tolerances |
| count | tableby Summary Statistics Functions |
| countcellpct | tableby Summary Statistics Functions |
| countN | tableby Summary Statistics Functions |
| countpct | tableby Summary Statistics Functions |
| countrowpct | tableby Summary Statistics Functions |
-- D --
| Date.mdy | Convert numeric dates to Date object, and vice versa |
| diffs | Extract differences |
| diffs.comparedf | Extract differences |
| diffs.summary.comparedf | Extract differences |
-- F --
| formulize | formulize |
| freq.control | Control settings for 'freqlist' function |
| freqlist | freqlist |
| freqlist.formula | freqlist |
| freqlist.internal | Helper functions for freqlist |
| freqlist.table | freqlist |
-- G --
| gmean | tableby Summary Statistics Functions |
| gmeanCI | tableby Summary Statistics Functions |
| gmeansd | tableby Summary Statistics Functions |
| gsd | tableby Summary Statistics Functions |
-- H --
| has_strata | 'arsenal' tables with common structure |
| head.summary.freqlist | Helper functions for freqlist |
| head.tableby | Helper functions for tableby |
-- I --
| includeNA | Some functions to handle NAs |
| includeNA.default | Some functions to handle NAs |
| includeNA.factor | Some functions to handle NAs |
| internal.functions | Internal Functions |
| iqr | tableby Summary Statistics Functions |
| is.Date | Convert numeric dates to Date object, and vice versa |
| is.freqlist | Helper functions for freqlist |
| is.modelsum | Helper functions for modelsum |
| is.na.selectall | Make a column for "select all" input |
| is.selectall | Make a column for "select all" input |
| is.summary.freqlist | Helper functions for freqlist |
| is.summary.modelsum | Helper functions for modelsum |
| is.summary.tableby | Helper functions for tableby |
| is.tableby | Helper functions for tableby |
| is.yaml | Include a YAML header in 'write2' |
-- K --
| keep.labels | Keep Labels |
| keep.labels.data.frame | Keep Labels |
| keep.labels.default | Keep Labels |
-- L --
| labels | Labels |
| labels.arsenal_table | 'arsenal' tables with common structure |
| labels.data.frame | Labels |
| labels.keep_labels | Labels |
| labels<- | Labels |
| labels<-.arsenal_table | 'arsenal' tables with common structure |
| labels<-.data.frame | Labels |
| labels<-.default | Labels |
| labels<-.keep_labels | Labels |
| loosen.labels | Keep Labels |
| loosen.labels.data.frame | Keep Labels |
| loosen.labels.default | Keep Labels |
-- M --
| mdy.Date | Convert numeric dates to Date object, and vice versa |
| meanCI | tableby Summary Statistics Functions |
| meansd | tableby Summary Statistics Functions |
| meanse | tableby Summary Statistics Functions |
| medianmad | tableby Summary Statistics Functions |
| medianq1q3 | tableby Summary Statistics Functions |
| medianrange | tableby Summary Statistics Functions |
| medSurv | tableby Summary Statistics Functions |
| medTime | tableby Summary Statistics Functions |
| merge.arsenal_table | 'arsenal' tables with common structure |
| merge.freqlist | 'arsenal' tables with common structure |
| mockstudy | Mock study data for examples |
| modelsum | Fit models over each of a set of independent variables with a response variable |
| modelsum.control | Control settings for 'modelsum' function |
| modelsum.family | Family functions for modelsum |
| modelsum.internal | Helper functions for modelsum |
| modpval.tableby | Helper functions for tableby |
| muck_up_mockstudy | Mock study data for examples |
-- N --
| N | tableby Summary Statistics Functions |
| n.diff.obs | Extract differences |
| n.diff.obs.comparedf | Extract differences |
| n.diff.obs.summary.comparedf | Extract differences |
| n.diffs | Extract differences |
| n.diffs.comparedf | Extract differences |
| n.diffs.summary.comparedf | Extract differences |
| na.modelsum | Helper functions for modelsum |
| NA.operations | Some functions to handle NAs |
| na.paired | Helper functions for paired |
| na.tableby | Helper functions for tableby |
| negbin | Family functions for modelsum |
| Nevents | tableby Summary Statistics Functions |
| NeventsSurv | tableby Summary Statistics Functions |
| nin | Not in |
| Nmiss | tableby Summary Statistics Functions |
| Nmiss2 | tableby Summary Statistics Functions |
| Npct | tableby Summary Statistics Functions |
| Nrisk | tableby Summary Statistics Functions |
| NriskSurv | tableby Summary Statistics Functions |
| Nsigntest | tableby Summary Statistics Functions |
-- O --
| Ops.tableby | Helper functions for tableby |
| ordinal | Family functions for modelsum |
-- P --
| padjust | Adjust P-values for Multiple Comparisons |
| padjust.default | Adjust P-values for Multiple Comparisons |
| padjust.summary.tableby | Adjust P-values for Multiple Comparisons |
| padjust.tableby | Adjust P-values for Multiple Comparisons |
| paired | Summary Statistics of a Set of Independent Variables Paired Across Two Timepoints |
| paired.control | Control settings for 'paired' function |
| paired.internal | Helper functions for paired |
| print.arsenal_table | 'arsenal' tables with common structure |
| print.comparedf | Compare two data.frames and report differences |
| print.summary.arsenal_table | 'arsenal' tables with common structure |
| print.summary.comparedf | The summary method for a 'comparedf' object |
| print.yaml | Include a YAML header in 'write2' |
-- Q --
| q1q3 | tableby Summary Statistics Functions |
-- R --
| relrisk | Family functions for modelsum |
| replace2 | Internal Functions |
| rowbinomCI | tableby Summary Statistics Functions |
-- S --
| selectall | Make a column for "select all" input |
| set_attr | Labels |
| set_labels | Labels |
| smart.split | Internal Functions |
| sort.freqlist | Helper functions for freqlist |
| sort.tableby | Helper functions for tableby |
| summary.comparedf | The summary method for a 'comparedf' object |
| summary.freqlist | summary.freqlist |
| summary.modelsum | Summarize a 'modelsum' object. |
| summary.tableby | The summary method for a 'tableby' object |
| survival | Family functions for modelsum |
-- T --
| tableby | Summary Statistics of a Set of Independent Variables by a Categorical Variable |
| tableby.control | Control settings for 'tableby' function |
| tableby.internal | Helper functions for tableby |
| tableby.stats | tableby Summary Statistics Functions |
| tableby.stats.internal | Internal 'tableby' functions |
| tail.summary.freqlist | Helper functions for freqlist |
| tail.tableby | Helper functions for tableby |
| tests | Helper functions for tableby |
| tests.tableby | Helper functions for tableby |
| tol.char.both | 'comparedf' tolerances |
| tol.char.case | 'comparedf' tolerances |
| tol.char.none | 'comparedf' tolerances |
| tol.char.trim | 'comparedf' tolerances |
| tol.date.absolute | 'comparedf' tolerances |
| tol.factor.labels | 'comparedf' tolerances |
| tol.factor.levels | 'comparedf' tolerances |
| tol.factor.none | 'comparedf' tolerances |
| tol.logical.none | 'comparedf' tolerances |
| tol.NA | 'comparedf' tolerances |
| tol.num.absolute | 'comparedf' tolerances |
| tol.num.pct | 'comparedf' tolerances |
| tol.num.percent | 'comparedf' tolerances |
| tol.other.none | 'comparedf' tolerances |
-- V --
| verbatim | Helper functions for 'write2' |
-- W --
| write2 | write2 |
| write2.arsenal_table | write2 |
| write2.character | write2 |
| write2.code.chunk | write2 |
| write2.comparedf | write2 |
| write2.default | write2 |
| write2.internal | Helper functions for 'write2' |
| write2.knitr_kable | write2 |
| write2.list | write2 |
| write2.summary.arsenal_table | write2 |
| write2.summary.comparedf | write2 |
| write2.verbatim | write2 |
| write2.xtable | write2 |
| write2.yaml | write2 |
| write2html | write2word, write2html, write2pdf |
| write2pdf | write2word, write2html, write2pdf |
| write2specific | write2word, write2html, write2pdf |
| write2word | write2word, write2html, write2pdf |
-- X --
| xtfrm.tableby | Helper functions for tableby |
-- Y --
| yaml | Include a YAML header in 'write2' |
-- misc --
| %nin% | Not in |
| [.arsenal_table | 'arsenal' tables with common structure |
| [.keep_labels | Keep Labels |
| [.selectall | Make a column for "select all" input |
| [<-.keep_labels | Keep Labels |