An Arsenal of 'R' Functions for Large-Scale Statistical Summaries


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Documentation for package ‘arsenal’ version 3.6.2

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A B C D F G H I K L M N O P Q R S T V W X Y misc

-- A --

allNA Some functions to handle NAs
arsenal An Arsenal of 'R' Functions for Large-Scale Statistical Summaries
arsenal-defunct Defunct functions in 'arsenal'
arsenal-deprecated Deprecated functions in 'arsenal'
arsenal_max tableby Summary Statistics Functions
arsenal_mean tableby Summary Statistics Functions
arsenal_median tableby Summary Statistics Functions
arsenal_min tableby Summary Statistics Functions
arsenal_range tableby Summary Statistics Functions
arsenal_sd tableby Summary Statistics Functions
arsenal_sum tableby Summary Statistics Functions
arsenal_table 'arsenal' tables with common structure
arsenal_var tableby Summary Statistics Functions
as.countpct Internal 'tableby' functions
as.data.frame.freqlist as.data.frame.freqlist
as.data.frame.modelsum as.data.frame.modelsum
as.data.frame.summary.freqlist summary.freqlist
as.data.frame.summary.modelsum Summarize a 'modelsum' object.
as.data.frame.summary.tableby The summary method for a 'tableby' object
as.data.frame.tableby as.data.frame.tableby
as.matrix.selectall Make a column for "select all" input
as.selectall Make a column for "select all" input
as.tbstat Internal 'tableby' functions
as.tbstat_multirow Internal 'tableby' functions

-- B --

binomCI tableby Summary Statistics Functions

-- C --

c.yaml Include a YAML header in 'write2'
clog Family functions for modelsum
code.chunk Helper functions for 'write2'
comparedf Compare two data.frames and report differences
comparedf.control Control settings for 'comparedf' function
comparedf.tolerances 'comparedf' tolerances
count tableby Summary Statistics Functions
countcellpct tableby Summary Statistics Functions
countN tableby Summary Statistics Functions
countpct tableby Summary Statistics Functions
countrowpct tableby Summary Statistics Functions

-- D --

Date.mdy Convert numeric dates to Date object, and vice versa
diffs Extract differences
diffs.comparedf Extract differences
diffs.summary.comparedf Extract differences

-- F --

formulize formulize
freq.control Control settings for 'freqlist' function
freqlist freqlist
freqlist.formula freqlist
freqlist.internal Helper functions for freqlist
freqlist.table freqlist

-- G --

gmean tableby Summary Statistics Functions
gmeanCI tableby Summary Statistics Functions
gmeansd tableby Summary Statistics Functions
gsd tableby Summary Statistics Functions

-- H --

has_strata 'arsenal' tables with common structure
head.summary.freqlist Helper functions for freqlist
head.tableby Helper functions for tableby

-- I --

includeNA Some functions to handle NAs
includeNA.default Some functions to handle NAs
includeNA.factor Some functions to handle NAs
internal.functions Internal Functions
iqr tableby Summary Statistics Functions
is.Date Convert numeric dates to Date object, and vice versa
is.freqlist Helper functions for freqlist
is.modelsum Helper functions for modelsum
is.na.selectall Make a column for "select all" input
is.selectall Make a column for "select all" input
is.summary.freqlist Helper functions for freqlist
is.summary.modelsum Helper functions for modelsum
is.summary.tableby Helper functions for tableby
is.tableby Helper functions for tableby
is.yaml Include a YAML header in 'write2'

-- K --

keep.labels Keep Labels
keep.labels.data.frame Keep Labels
keep.labels.default Keep Labels

-- L --

labels Labels
labels.arsenal_table 'arsenal' tables with common structure
labels.data.frame Labels
labels.keep_labels Labels
labels<- Labels
labels<-.arsenal_table 'arsenal' tables with common structure
labels<-.data.frame Labels
labels<-.default Labels
labels<-.keep_labels Labels
loosen.labels Keep Labels
loosen.labels.data.frame Keep Labels
loosen.labels.default Keep Labels

-- M --

mdy.Date Convert numeric dates to Date object, and vice versa
meanCI tableby Summary Statistics Functions
meansd tableby Summary Statistics Functions
meanse tableby Summary Statistics Functions
medianmad tableby Summary Statistics Functions
medianq1q3 tableby Summary Statistics Functions
medianrange tableby Summary Statistics Functions
medSurv tableby Summary Statistics Functions
medTime tableby Summary Statistics Functions
merge.arsenal_table 'arsenal' tables with common structure
merge.freqlist 'arsenal' tables with common structure
mockstudy Mock study data for examples
modelsum Fit models over each of a set of independent variables with a response variable
modelsum.control Control settings for 'modelsum' function
modelsum.family Family functions for modelsum
modelsum.internal Helper functions for modelsum
modpval.tableby Helper functions for tableby
muck_up_mockstudy Mock study data for examples

-- N --

N tableby Summary Statistics Functions
n.diff.obs Extract differences
n.diff.obs.comparedf Extract differences
n.diff.obs.summary.comparedf Extract differences
n.diffs Extract differences
n.diffs.comparedf Extract differences
n.diffs.summary.comparedf Extract differences
na.modelsum Helper functions for modelsum
NA.operations Some functions to handle NAs
na.paired Helper functions for paired
na.tableby Helper functions for tableby
negbin Family functions for modelsum
Nevents tableby Summary Statistics Functions
NeventsSurv tableby Summary Statistics Functions
nin Not in
Nmiss tableby Summary Statistics Functions
Nmiss2 tableby Summary Statistics Functions
Npct tableby Summary Statistics Functions
Nrisk tableby Summary Statistics Functions
NriskSurv tableby Summary Statistics Functions

-- O --

Ops.tableby Helper functions for tableby
ordinal Family functions for modelsum

-- P --

padjust Adjust P-values for Multiple Comparisons
padjust.default Adjust P-values for Multiple Comparisons
padjust.summary.tableby Adjust P-values for Multiple Comparisons
padjust.tableby Adjust P-values for Multiple Comparisons
paired Summary Statistics of a Set of Independent Variables Paired Across Two Timepoints
paired.control Control settings for 'paired' function
paired.internal Helper functions for paired
print.arsenal_table 'arsenal' tables with common structure
print.comparedf Compare two data.frames and report differences
print.summary.arsenal_table 'arsenal' tables with common structure
print.summary.comparedf The summary method for a 'comparedf' object
print.yaml Include a YAML header in 'write2'

-- Q --

q1q3 tableby Summary Statistics Functions

-- R --

relrisk Family functions for modelsum
replace2 Internal Functions
rowbinomCI tableby Summary Statistics Functions

-- S --

selectall Make a column for "select all" input
set_attr Labels
set_labels Labels
smart.split Internal Functions
sort.freqlist Helper functions for freqlist
sort.tableby Helper functions for tableby
summary.comparedf The summary method for a 'comparedf' object
summary.freqlist summary.freqlist
summary.modelsum Summarize a 'modelsum' object.
summary.tableby The summary method for a 'tableby' object
survival Family functions for modelsum

-- T --

tableby Summary Statistics of a Set of Independent Variables by a Categorical Variable
tableby.control Control settings for 'tableby' function
tableby.internal Helper functions for tableby
tableby.stats tableby Summary Statistics Functions
tableby.stats.internal Internal 'tableby' functions
tail.summary.freqlist Helper functions for freqlist
tail.tableby Helper functions for tableby
tests Helper functions for tableby
tests.tableby Helper functions for tableby
tol.char.both 'comparedf' tolerances
tol.char.case 'comparedf' tolerances
tol.char.none 'comparedf' tolerances
tol.char.trim 'comparedf' tolerances
tol.date.absolute 'comparedf' tolerances
tol.factor.labels 'comparedf' tolerances
tol.factor.levels 'comparedf' tolerances
tol.factor.none 'comparedf' tolerances
tol.logical.none 'comparedf' tolerances
tol.NA 'comparedf' tolerances
tol.num.absolute 'comparedf' tolerances
tol.num.pct 'comparedf' tolerances
tol.num.percent 'comparedf' tolerances
tol.other.none 'comparedf' tolerances

-- V --

verbatim Helper functions for 'write2'

-- W --

write2 write2
write2.arsenal_table write2
write2.character write2
write2.code.chunk write2
write2.comparedf write2
write2.default write2
write2.internal Helper functions for 'write2'
write2.knitr_kable write2
write2.list write2
write2.summary.arsenal_table write2
write2.summary.comparedf write2
write2.verbatim write2
write2.xtable write2
write2.yaml write2
write2html write2word, write2html, write2pdf
write2pdf write2word, write2html, write2pdf
write2specific write2word, write2html, write2pdf
write2word write2word, write2html, write2pdf

-- X --

xtfrm.tableby Helper functions for tableby

-- Y --

yaml Include a YAML header in 'write2'

-- misc --

%nin% Not in
[.arsenal_table 'arsenal' tables with common structure
[.keep_labels Keep Labels
[.selectall Make a column for "select all" input
[<-.keep_labels Keep Labels