ridge-package |
ridge-package description |
coef.ridgeLinear |
Linear ridge regression. |
coef.ridgeLogistic |
Logistic ridge regression. |
GenBin |
Simulated genetic data with a binary phenotypes |
GenBin_genotypes |
Simulated genetic data with a binary phenotypes |
GenBin_phenotypes |
Simulated genetic data with a binary phenotypes |
GenCont |
Simulated genetic data with continuous outcomes |
GenCont_genotypes |
Simulated genetic data with continuous outcomes |
GenCont_phenotypes |
Simulated genetic data with continuous outcomes |
Gorman |
The Ten-Factor data first described by Gorman and Toman (1966). |
Hald |
Hald data |
linearRidge |
Linear ridge regression. |
linearRidgeGenotypes |
Fits linear ridge regression models for genome-wide SNP data. |
linearRidgeGenotypesPredict |
Predict phenotypes from genome-wide SNP data based on a file of coefficients |
logisticRidge |
Logistic ridge regression. |
logisticRidgeGenotypes |
Fits logistic ridge regression models for genomoe-wide SNP data. |
logisticRidgeGenotypesPredict |
Predict fitted probabilities from genome-wide SNP data based on a file of coefficients |
nobs.ridgeLinear |
Linear ridge regression. |
plot.pvalsRidgeLinear |
Compute p-values for ridgeLinear and ridgeLogistic models |
plot.pvalsRidgeLogistic |
Compute p-values for ridgeLinear and ridgeLogistic models |
plot.ridgeLinear |
Linear ridge regression. |
plot.ridgeLogistic |
Logistic ridge regression. |
predict.ridgeLinear |
Linear ridge regression. |
predict.ridgeLogistic |
Logistic ridge regression. |
print.pvalsRidgeLinear |
Compute p-values for ridgeLinear and ridgeLogistic models |
print.pvalsRidgeLogistic |
Compute p-values for ridgeLinear and ridgeLogistic models |
print.ridgeLinear |
Linear ridge regression. |
print.ridgeLogistic |
Logistic ridge regression. |
print.summary.ridgeLinear |
Linear ridge regression. |
print.summary.ridgeLogistic |
Logistic ridge regression. |
pvals |
Compute p-values for ridgeLinear and ridgeLogistic models |
pvals.ridgeLinear |
Compute p-values for ridgeLinear and ridgeLogistic models |
pvals.ridgeLogistic |
Compute p-values for ridgeLinear and ridgeLogistic models |
ridge |
ridge: Linear and logistic ridge regression functions. |
summary.ridgeLinear |
Linear ridge regression. |
summary.ridgeLogistic |
Logistic ridge regression. |