Create and Evaluate NONMEM Models in a Project Context

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Documentation for package ‘nonmemica’ version 1.0.8

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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nonmemica-package	Create and Evaluate NONMEM Models in a Project Context
absolute	Check if File Path is Absolute
as.best.default	Convert Vector to Best of Numeric or Character
as.bootstrap.bootstrap	Create Bootstrap from Bootstrap
as.halfmatrix.default	Coerce to Half Matrix by Default
as.init.init	Coerce init to init
as.inits.list	Coerce list to inits
as.matrix.halfmatrix	Coerce Half Matrix to Matrix
as.model.character	Coerce character to model
as.xml_document	Create an xml_document in a Project Context
as.xml_document.character	Create xml_document From Character
as.xml_document.xml_document	Create an xml_document in a Project Context
as_nms_canonical	Coerce to 'nms_canonical'
as_nms_nonmem	Coerce to 'nms_nonmem'
as_nms_pmx	Coerce to 'nms_pmx'
as_nms_psn	Coerce to 'nms_psn'
comments.inits	Extract Comments from Inits
comments.items	Extract Comments from Items
comments.model	Extract Comments from Model
contains	Check Whether Text Contains Pattern
datafile.character	Identify the Datafile for a Model
definitions	Harvest Model Item Definitions
definitions.character	Harvest Model Item Definitions
definitions.definitions	Create Model Item Definitions from definitions
depends.default	Identify Model Dependencies
errors.character	Get Errors for Character
estimates.character	Get Estimates for Character
fixed.init	Check if init is fixed
fixed.model	Check If Model is Fixed
generalize	Generalize a Nonmissing Value
ignored	Extract Index for Ignored Records
initial.model	Get Model Initial Estimates
initial<-.model	Set Upper Bounds for Model Initial Estimates
likebut	Modify a Model
lower.model	Get Lower Bounds for Model Initial Estimates
lower<-.model	Set Lower Bounds for Model Initial Estimates
meta.character	Get Metadata for Character
metaplot.character	Metaplot Character
metaplot_character	Metaplot Character, Standard Evaluation
metasuperset	Retrieve Model Outputs with Metadata
modeldir	Identify the Directory for a Model
modelfile	Identify the Modelfile for a Model
modelpath	Resolve A Path to a Model-related File
modelpath.character	Resolve A Path to a Model-related File for Character
ninput	Calculate Number of Inputs
ninput.character	Calculate Number of Inputs for Character
ninput.numeric	Calculate Number of Inputs for Numeric
nms	Translate Parameter Names
nms_canonical.character	Generate Canonical Names for Character
nms_canonical.model	Generate Canonical Names for Model
nms_canonical.nms_nonmem	Convert NONMEM Parameter Names to Canonical
nms_nonmem.character	Generate NONMEM Names for Character
nms_nonmem.model	Generate NONMEM Names for Model
nms_nonmem.nms_canonical	Convert Canonical Parameter Names to NONMEM
nms_nonmem.nms_pmx	Convert pmxTools Names to NONMEM
nms_pmx.nms_canonical	Convert Canonical Names to pmxTools
nms_pmx.nms_nonmem	Convert NONMEM Names to pmxTools
nms_psn.character	Generate PsN-style Names for Character
nms_psn.model	Generate PsN-style Names for Model
nonmemica	Create and Evaluate NONMEM Models in a Project Context
offdiag.halfmatrix	Isolate Off-diagonal of Half Matrix
parameters.character	Get Parameters for Character
partab	Create Parameter Table
partab.character	Create a Parameter Table from Model Name
partab.partab	Create Parameter Table
problem.character	Identify the Model Problem Statement for Character
psn_nested	PsN Model File is Nested
psn_options	Set PsN Options
relativizePath	Relativize a Path
resolve	Resolve File Path
rosetta	Translate Parameter Names
runlog.character	Create a Runlog for Character
safe_join	Join Data Safely
safe_join.data.frame	Join Data Frames Safely
shuffle	Move the Columns of a Data Frame Relative to Each Other
specfile.character	Identify the Data Specification File for a Model
superset.character	Coerce to Superset from Character
superspec	Create Specification for Model Inputs and Outputs
superspec.character	Create Specification for Model Inputs and Outputs From Character
superspec.numeric	Create Specification for Model Inputs and Outputs From Numeric
tad	Calculate Time Since Most Recent Dose
tad1	A NONMEM-like Dataset
tod	Calculate Time of Most Recent Dose
tweak.default	Tweak a Model by Default
tweak.model	Tweak Model
updated.character	Create the Updated Version of Character
upper.model	Get Upper Bounds for Model Initial Estimates
upper<-.model	Set Upper Bounds for Model Initial Estimates
xpath	Evaluate Xpath Expression
xpath.default	Evaluate xpath Expression in Default Context
xpath.xml_document	Evaluate xpath Expression in Document Context