Tools for Analyzing Crossover Interference
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Documentation for package ‘xoi’ version 0.72
Help Pages
| bssbsb | BSS/BSB backcross data |
| chiasma | Estimate chiasma distribution from crossover counts |
| coincidence | Estimate coincidence function |
| convertxoloc | Convert format of crossover locations data |
| countxo | Estimate number of crossovers |
| distance.given.two | Distance between crossovers given there are two |
| est.coi | Estimate the coincidence function |
| est.coi.um | Estimate the coincidence as a function of micron distance |
| est.recrate | Estimate recombination rate |
| find.breaks | Estimate crossover locations |
| first.given.two | Location of first crossover given there are two |
| firstden | Distance to a crossover |
| fitGamma | Fit Gamma model |
| fitStahl | Fit Stahl model |
| gammacoi | Coincidence function for the gamma model |
| intensity | Estimate intensity function |
| ioden | Distance between crossovers |
| joint.given.two | Crossover locations given there are two |
| kfunc | estimate Ripley's K function |
| location.given.one | Location of crossover given there is one |
| recrate2scanone | Convert recrate to scanone format |
| simStahl | Simulate crossover locations under the Stahl model |
| stahlcoi | Coincidence function for the Stahl model |
| stahlLoglik | Calculate log likelihood for Stahl model |
| xoiversion | Installed version of R/xoi |
| xoprob | Distribution of number of crossovers |