Methods for Evaluating Principal Surrogates of Treatment Response


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Documentation for package ‘pseval’ version 1.3.1

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+.ps Modify a psdesign object by adding on new components.
add_bootstrap Bootstrap resampling parameters
add_estimate Estimate parameters
add_integration Integration models
add_riskmodel Add risk model to a psdesign object
calc_risk Calculate the risk and functions of the risk
calc_STG Calculate the Standardized total gain
empirical_TE Compute the empirical Treatment Efficacy
empirical_VE Compute the empirical Treatment Efficacy
expand_augdata Expand augmented data using the integration function
generate_example_data Generate sample data used for testing
integrate_bivnorm Bivariate normal integration models for the missing S(1)
integrate_nonparametric Nonparametric integration model for the missing S(1)
integrate_parametric Parametric integration model for the missing S(1)
integrate_semiparametric Semiparametric integration model using the location-scale model
plot.psdesign Plot summary statistics for a psdesign object
print.psdesign Concisely print information about a psdesign object
psdesign Specify a design for a principal surrogate evaluation
pseudo_score Estimate parameters from a specified model using pseudo-score
ps_bootstrap Estimate parameters from a specified model using bootstrap resampling and estimated maximum likelihood
ps_estimate Estimate parameters from a specified model using estimated maximum likelihood
risk.logit Logit link function
risk.probit Probit link function
riskcalc Calculate risks with handlers for survival data
risk_binary Risk model for binary outcome
risk_continuous Risk model for continuous outcome
risk_exponential Exponential risk model for time to event outcome
risk_poisson Poisson risk model for count outcomes
risk_weibull Weibull risk model for time to event outcome
sp_locscale Fit the semi-parametric location-scale model
stg Compute the standardized total gain
summarize_bs Summarize bootstrap samples
summary.psdesign Summary method for psdesign objects
TE Treatment efficacy contrast functions
verify_trt Check that a variable is suitable for using as binary treatment indicator
wem_test Test for wide effect modification