abf |
Approximate Bayes Factor |
analyse.models |
Summarize MCMC sample of Bayesian logic regression models |
buildSNPannotation |
Construct Annotation for Affymetrix SNP Chips |
cohen |
Simple Matching Coefficient and Cohen's Kappa |
colEpistatic |
Cordell's Test for Epistatic Interactions |
computeContCells |
Pairwise Contingency Tables |
computeContClass |
Rowwise Contigency Tables |
fblr |
Full Bayesian Logic Regression for SNP Data |
fblr.weight |
Full Bayesian Logic Regression for SNP Data |
getMatFuzzy |
Trend Test for Fuzzy Genotype Calls |
gknn |
Generalized k Nearest Neighbors |
identifyMonomorphism |
Identification of Constant Variables |
knncatimpute |
Missing Value Imputation with kNN |
knncatimputeLarge |
Missing Value Imputation with kNN for High-Dimensional Data |
pamCat |
Prediction Analysis of Categorical Data |
pcc |
Pearson's Contingency Coefficient |
predict.pamCat |
Predict Method for pamCat Objects |
predictFBLR |
Predict Case Probabilities with Full Bayesian Logic Regression |
print.colEpi |
Cordell's Test for Epistatic Interactions |
print.pamCat |
Prediction Analysis of Categorical Data |
print.simSNPcatResponse |
Simulation of SNP Data with Categorical Response |
recodeAffySNP |
Recoding of Affymetrix SNP Values |
recodeSNPs |
Recoding of SNP Values |
rowCATTs |
Rowwise Cochran-Armitage Trend Test Based on Tables |
rowChisq2Class |
Rowwise Pearson's ChiSquare Test Based on Tables |
rowChisqMultiClass |
Rowwise Pearson's ChiSquare Test Based on Tables |
rowChisqStats |
Rowwise Pearson's ChiSquare Statistic |
rowCors |
Rowwise Correlation with a Vector |
rowEpistatic |
Cordell's Test for Epistatic Interactions |
rowFreqs |
Rowwise Frequencies |
rowHWEs |
Rowwise Test for Hardy-Weinberg Equilibrium |
rowMAFs |
Rowwise Minor Allele Frequency |
rowMsquares |
Rowwise Linear Trend Test Based on Tables |
rowScales |
Rowwise Scaling |
rowTables |
Rowwise Tables |
rowTrendFuzzy |
Trend Test for Fuzzy Genotype Calls |
rowTrendStats |
Rowwise Linear Trend Tests |
shortenGeneDescription |
Shorten the Gene Description |
showChanges |
Displaying Changes |
simulateSNPcatResponse |
Simulation of SNP Data with Categorical Response |
simulateSNPglm |
Simulation of SNP data |
simulateSNPs |
Simulation of SNP data |
smc |
Simple Matching Coefficient and Cohen's Kappa |
snp2bin |
Transformation of SNPs to Binary Variables |
summary.simSNPglm |
Summarizing a simSNPglm object |