epicurve |
Plot the epidemic curve |
episim |
Simulation of an incidence time series |
eruptions |
Eruption times in Yellowstone National Park |
estimIncub |
Estimation of the incubation density based on coarse data |
estimR |
Estimation of the reproduction number with Laplacian-P-splines |
estimRmcmc |
Estimation of the reproduction number with Laplacian-P-splines via MCMC |
histosmooth |
Histogram smoothing with Laplacian-P-splines |
Idist |
Density function and discrete distribution for a disease interval |
incubsim |
Simulation of incubation times |
influenza2009 |
Data on the 2009 pandemic influenza in Pennsylvania |
perfRestim |
Routine to measure the performance of estimR and estimRmcmc |
plot.Idist |
Plot the interval distribution from an Idist object |
plot.incubestim |
Plot the estimated incubation distribution |
plot.Rt |
Plot the estimated reproduction number |
Rmodelpriors |
Prior specification for model hyperparameters |
sars2003 |
Daily incidence of the 2003 SARS epidemic in Hong Kong |
summary.Rt |
Summarize the estimated reproduction number |
zika2015 |
Data on the 2015 Zika virus disease in Colombia |