A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters

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Documentation for package ‘EpiLPS’ version 1.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cov19incidence2022	Incidence data for Belgium in 2022
cov19mort2021	Mortality data for Belgium in 2021
epicurve	Plot the epidemic curve
episim	Simulation of an incidence time series
eruptions	Eruption times in Yellowstone National Park
estimIncub	Estimation of the incubation density based on coarse data
estimR	Estimation of the reproduction number with Laplacian-P-splines
estimRmcmc	Estimation of the reproduction number with Laplacian-P-splines via MCMC
histosmooth	Histogram smoothing with Laplacian-P-splines
Idist	Density function and discrete distribution for a disease interval
incubsim	Simulation of incubation times
influenza2009	Data on the 2009 pandemic influenza in Pennsylvania
nowcasting	Nowcasting and estimation of occurred but not yet reported events
nowcastingR	Nowcasting the reproduction number
perfRestim	Routine to measure the performance of estimR and estimRmcmc
plot.Idist	Plot the interval distribution from an Idist object
plot.incubestim	Plot the estimated incubation distribution
plot.nowcasted	Plot of nowcasted cases and delay distribution
plot.Rt	Plot the estimated reproduction number
plot.Rtnow	Plot the nowcasted reproduction number
Rmodelpriors	Prior specification for model hyperparameters
sars2003	Daily incidence of the 2003 SARS epidemic in Hong Kong
summary.Rt	Summarize the estimated reproduction number
zika2015	Data on the 2015 Zika virus disease in Colombia