Nonlinear Mixed Effects Models in Population PK/PD, Estimation
Routines
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Documentation for package ‘nlmixr2est’ version 2.2.1
Help Pages
A B C F G I L N O P R S T U V Y
-- A --
| addCwres | Add CWRES |
| addNpde | NPDE calculation for nlmixr2 |
| addTable | Add table information to nlmixr2 fit object without tables |
| assertNlmixrFit | Assert that this is a nlmixr2 fit object |
| assertNlmixrFitData | Assert that this is a nlmixr2 fit data object |
| augPred.nlmixr2FitData | Augmented Prediction for nlmixr2 fit |
-- B --
| bobyqaControl | Control for bobyqa estimation method in nlmixr2 |
| boxCox | Cox Box, Yeo Johnson and inverse transformation |
-- C --
| cholSE | Generalized Cholesky Matrix Decomposition |
-- F --
| foceiControl | Control Options for FOCEi |
-- G --
| getOfvType | Set/get Objective function type for a nlmixr2 object |
| getValidNlmixrControl | Get valid nlmixr control object |
| getValidNlmixrCtl | Get valid nlmixr control object |
| getValidNlmixrCtl.bobyqa | Get valid nlmixr control object |
| getValidNlmixrCtl.default | Get valid nlmixr control object |
| getValidNlmixrCtl.fo | Get valid nlmixr control object |
| getValidNlmixrCtl.foce | Get valid nlmixr control object |
| getValidNlmixrCtl.focei | Get valid nlmixr control object |
| getValidNlmixrCtl.foi | Get valid nlmixr control object |
| getValidNlmixrCtl.lbfgsb3c | Get valid nlmixr control object |
| getValidNlmixrCtl.n1qn1 | Get valid nlmixr control object |
| getValidNlmixrCtl.newuoa | Get valid nlmixr control object |
| getValidNlmixrCtl.nlm | Get valid nlmixr control object |
| getValidNlmixrCtl.nlme | Get valid nlmixr control object |
| getValidNlmixrCtl.nlminb | Get valid nlmixr control object |
| getValidNlmixrCtl.nls | Get valid nlmixr control object |
| getValidNlmixrCtl.optim | Get valid nlmixr control object |
| getValidNlmixrCtl.posthoc | Get valid nlmixr control object |
| getValidNlmixrCtl.rxSolve | Get valid nlmixr control object |
| getValidNlmixrCtl.saem | Get valid nlmixr control object |
| getValidNlmixrCtl.simulate | Get valid nlmixr control object |
| getValidNlmixrCtl.simulation | Get valid nlmixr control object |
| getValidNlmixrCtl.tableControl | Get valid nlmixr control object |
| getValidNlmixrCtl.uobyqa | Get valid nlmixr control object |
-- I --
| iBoxCox | Cox Box, Yeo Johnson and inverse transformation |
| iYeoJohnson | Cox Box, Yeo Johnson and inverse transformation |
-- L --
| lbfgsb3cControl | Control for lbfgsb3c estimation method in nlmixr2 |
-- N --
| n1qn1Control | Control for n1qn1 estimation method in nlmixr2 |
| newuoaControl | Control for newuoa estimation method in nlmixr2 |
| nlmControl | nlmixr2 defaults controls for nlm |
| nlmeControl | Control Values for nlme Fit with extra options for nlmixr |
| nlminbControl | nlmixr2 nlminb defaults |
| nlmixr | nlmixr2 fits population PK and PKPD non-linear mixed effects models. |
| nlmixr2 | nlmixr2 fits population PK and PKPD non-linear mixed effects models. |
| nlmixr2.function | nlmixr2 fits population PK and PKPD non-linear mixed effects models. |
| nlmixr2.nlmixr2FitCore | nlmixr2 fits population PK and PKPD non-linear mixed effects models. |
| nlmixr2.nlmixr2FitData | nlmixr2 fits population PK and PKPD non-linear mixed effects models. |
| nlmixr2.rxUi | nlmixr2 fits population PK and PKPD non-linear mixed effects models. |
| nlmixr2AllEst | Show all the current estimation methods |
| nlmixr2AugPredSolve | Augmented Prediction for nlmixr2 fit |
| nlmixr2CreateOutputFromUi | Create nlmixr output from the UI |
| nlmixr2Est | Generic for nlmixr2 estimation methods |
| nlmixr2Est.bobyqa | Generic for nlmixr2 estimation methods |
| nlmixr2Est.default | Generic for nlmixr2 estimation methods |
| nlmixr2Est.fo | Generic for nlmixr2 estimation methods |
| nlmixr2Est.foce | Generic for nlmixr2 estimation methods |
| nlmixr2Est.focei | Generic for nlmixr2 estimation methods |
| nlmixr2Est.foi | Generic for nlmixr2 estimation methods |
| nlmixr2Est.lbfgsb3c | Generic for nlmixr2 estimation methods |
| nlmixr2Est.n1qn1 | Generic for nlmixr2 estimation methods |
| nlmixr2Est.newuoa | Generic for nlmixr2 estimation methods |
| nlmixr2Est.nlm | Generic for nlmixr2 estimation methods |
| nlmixr2Est.nlme | Generic for nlmixr2 estimation methods |
| nlmixr2Est.nlminb | Generic for nlmixr2 estimation methods |
| nlmixr2Est.nls | Generic for nlmixr2 estimation methods |
| nlmixr2Est.optim | Generic for nlmixr2 estimation methods |
| nlmixr2Est.output | Generic for nlmixr2 estimation methods |
| nlmixr2Est.posthoc | Generic for nlmixr2 estimation methods |
| nlmixr2Est.predict | Generic for nlmixr2 estimation methods |
| nlmixr2Est.rxSolve | Generic for nlmixr2 estimation methods |
| nlmixr2Est.saem | Generic for nlmixr2 estimation methods |
| nlmixr2Est.simulate | Generic for nlmixr2 estimation methods |
| nlmixr2Est.simulation | Generic for nlmixr2 estimation methods |
| nlmixr2Est.uobyqa | Generic for nlmixr2 estimation methods |
| nlmixr2Gill83 | Get the optimal forward difference interval by Gill83 method |
| nlmixr2Hess | Calculate Hessian |
| nlmixr2Keywords | A list and description of the fields in the nlmxir2 object |
| nlmixr2Logo | Messages the nlmixr2 logo... |
| nlmixr2NlmeControl | Control Values for nlme Fit with extra options for nlmixr |
| nlmixr2Validate | Validate nlmixr2 |
| nlmixr2Version | Display nlmixr2's version |
| nlmixrAddObjectiveFunctionDataFrame | Add objective function data frame to the current objective function |
| nlmixrAddTiming | Manually add time to a nlmixr2 object |
| nlmixrCbind | nlmixrCbind |
| nlmixrClone | Clone nlmixr environment |
| nlmixrWithTiming | Time a part of a nlmixr operation and add to nlmixr object |
| nlsControl | nlmixr2 defaults controls for nls |
| nmNearPD | C++ implementation of Matrix's nearPD |
| nmObjGetControl | Get control object from fit |
| nmObjGetControl.bobyqa | Get control object from fit |
| nmObjGetControl.default | Get control object from fit |
| nmObjGetControl.fo | Get control object from fit |
| nmObjGetControl.foce | Get control object from fit |
| nmObjGetControl.focei | Get control object from fit |
| nmObjGetControl.foi | Get control object from fit |
| nmObjGetControl.lbfgsb3c | Get control object from fit |
| nmObjGetControl.n1qn1 | Get control object from fit |
| nmObjGetControl.newuoa | Get control object from fit |
| nmObjGetControl.nlm | Get control object from fit |
| nmObjGetControl.nlme | Get control object from fit |
| nmObjGetControl.nlminb | Get control object from fit |
| nmObjGetControl.nls | Get control object from fit |
| nmObjGetControl.optim | Get control object from fit |
| nmObjGetControl.posthoc | Get control object from fit |
| nmObjGetControl.saem | Get control object from fit |
| nmObjGetControl.uobyqa | Get control object from fit |
| nmObjGetEstimationModel | Get the estimation model for a fit object depending on the object type |
| nmObjGetEstimationModel.default | Get the ipred model for a fit object depending on the object type |
| nmObjGetEstimationModel.saem | Get the ipred model for a fit object depending on the object type |
| nmObjGetFoceiControl | Method for getting focei compatible control object from nlmixr object |
| nmObjGetFoceiControl.default | Method for getting focei compatible control object from nlmixr object |
| nmObjGetFoceiControl.nlme | Method for getting focei compatible control object from nlmixr object |
| nmObjGetFoceiControl.saem | Method for getting focei compatible control object from nlmixr object |
| nmObjGetIpredModel | Get the ipred model for a fit object depending on the object type |
| nmObjGetIpredModel.default | Get the ipred model for a fit object depending on the object type |
| nmObjGetIpredModel.saem | Get the ipred model for a fit object depending on the object type |
| nmObjGetPredOnly | Get the pred-only model for a fit depending on the object type |
| nmObjGetPredOnly.default | Get the pred-only model for a fit depending on the object type |
| nmObjGetPredOnly.saem | Get the pred-only model for a fit depending on the object type |
| nmObjHandleControlObject | Handle the control object |
| nmObjHandleControlObject.bobyqaControl | Handle the control object |
| nmObjHandleControlObject.default | Handle the control object |
| nmObjHandleControlObject.foceiControl | Handle the control object |
| nmObjHandleControlObject.lbfgsb3cControl | Handle the control object |
| nmObjHandleControlObject.n1qn1Control | Handle the control object |
| nmObjHandleControlObject.newuoaControl | Handle the control object |
| nmObjHandleControlObject.nlmControl | Handle the control object |
| nmObjHandleControlObject.nlmeControl | Handle the control object |
| nmObjHandleControlObject.nlminbControl | Handle the control object |
| nmObjHandleControlObject.nlsControl | Handle the control object |
| nmObjHandleControlObject.optimControl | Handle the control object |
| nmObjHandleControlObject.saemControl | Handle the control object |
| nmObjHandleControlObject.uobyqaControl | Handle the control object |
| nmObjHandleModelObject | Handle Model Object |
| nmObjHandleModelObject.default | Handle Model Object |
| nmObjHandleModelObject.foceiModelList | Handle Model Object |
| nmObjHandleModelObject.saemModelList | Handle Model Object |
| nmObjUiSetCompressed | Set if the nlmixr2 object will return a compressed ui |
| nmsimplex | Nelder-Mead simplex search |
| nmTest | Validate nlmixr2 |
-- O --
| ofv | Return the objective function |
| optimControl | nlmixr2 optim defaults |
-- P --
| print.saemFit | Print an SAEM model fit summary |
-- R --
| residuals.nlmixr2FitData | Extract residuals from the FOCEI fit |
-- S --
| saemControl | Control Options for SAEM |
| setCov | Set the covariance type based on prior calculated covariances |
| setOfv | Set/get Objective function type for a nlmixr2 object |
| sqrtm | Return the square root of general square matrix A |
| summary.saemFit | Print an SAEM model fit summary |
-- T --
| tableControl | Output table/data.frame options |
-- U --
| uobyqaControl | Control for uobyqa estimation method in nlmixr2 |
-- V --
| vpcSim | VPC simulation |
-- Y --
| yeoJohnson | Cox Box, Yeo Johnson and inverse transformation |