Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

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Documentation for package ‘ade4’ version 1.7-22

• DESCRIPTION file.

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A B C D E F G H I J K L M N O P Q R S T U V W Y Z misc

ade4-package

The ade4 package

-- A --

abouheif.eg	Phylogenies and quantitative traits from Abouheif
acacia	Spatial pattern analysis in plant communities
acm.burt	Multiple Correspondence Analysis
acm.disjonctif	Multiple Correspondence Analysis
add.position.triangle	Triangular Plotting
add.scatter	Add graphics to an existing plot
add.scatter.eig	Add graphics to an existing plot
ade4	The ade4 package
ade4-deprecated	Deprecated functions in ade4
aminoacyl	Codon usage
amova	Analysis of molecular variance
apis108	Allelic frequencies in ten honeybees populations at eight microsatellites loci
apqe	Apportionment of Quadratic Entropy
aravo	Distribution of Alpine plants in Aravo (Valloire, France)
ardeche	Fauna Table with double (row and column) partitioning
area.plot	Graphical Display of Areas
area.util.class	Graphical Display of Areas
area.util.contour	Graphical Display of Areas
area.util.xy	Graphical Display of Areas
area2link	Graphical Display of Areas
area2poly	Graphical Display of Areas
arrival	Arrivals at an intensive care unit
as.data.frame.kdist	the class of objects 'kdist' (K distance matrices)
as.dudi	Duality Diagram
as.krandboot	Bootstrap simulations
as.krandtest	Class of the Permutation Tests (in C).
as.krandxval	Two-fold cross-validation
as.randboot	Bootstrap simulations
as.randtest	Class of the Permutation Tests (in C).
as.randxval	Two-fold cross-validation
as.taxo	Taxonomy
atlas	Small Ecological Dataset
atya	Genetic variability of Cacadors
avijons	Bird species distribution
avimedi	Fauna Table for Constrained Ordinations
aviurba	Ecological Tables Triplet

-- B --

bacteria	Genomes of 43 Bacteria
banque	Table of Factors
baran95	African Estuary Fishes
bca	Between-Class Analysis
bca.coinertia	Between-class coinertia analysis
bca.dpcoa	Between- and within-class double principal coordinate analysis
bca.dudi	Between-Class Analysis
bca.rlq	Between-Class RLQ analysis
bf88	Cubic Ecological Data
bicenter.wt	Double Weighted Centring
biplot.dudi	Graphical representation of the outputs of a multivariate analysis
bordeaux	Wine Tasting
boxplot.acm	Multiple Correspondence Analysis
bsetal97	Ecological and Biological Traits
buech	Buech basin
butterfly	Genetics-Ecology-Environment Triple
bwca.dpcoa	Between- and within-class double principal coordinate analysis

-- C --

c.kdist	the class of objects 'kdist' (K distance matrices)
c.ktab	the class of objects 'ktab' (K-tables)
cailliez	Transformation to make Euclidean a distance matrix
capitales	Road Distances
carni19	Phylogeny and quantative trait of carnivora
carni70	Phylogeny and quantitative traits of carnivora
carniherbi49	Taxonomy, phylogenies and quantitative traits of carnivora and herbivora
casitas	Enzymatic polymorphism in Mus musculus
chatcat	Qualitative Weighted Variables
chats	Pair of Variables
chazeb	Charolais-Zebus
chevaine	Enzymatic polymorphism in Leuciscus cephalus
chickenk	Veterinary epidemiological study to assess the risk factors for losses in broiler chickens
clementines	Fruit Production
cnc2003	Frequenting movie theaters in France in 2003
coinertia	Coinertia Analysis
col.names	the class of objects 'ktab' (K-tables)
col.names.ktab	the class of objects 'ktab' (K-tables)
col.names<-	the class of objects 'ktab' (K-tables)
col.names<-.ktab	the class of objects 'ktab' (K-tables)
coleo	Table of Fuzzy Biological Traits
combine.4thcorner	Functions to combine and adjust the outputs 3-table methods
combine.randtest.rlq	Functions to combine and adjust the outputs 3-table methods
corkdist	Tests of randomization between distances applied to 'kdist' objetcs
corvus	Corvus morphology
costatis	STATIS and Co-Inertia : Analysis of a series of paired ecological tables
costatis.randtest	Monte-Carlo test on a Costatis analysis (in C).
covfacwt	Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor)
covwt	Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor)

-- D --

dagnelie.test	Dagnelie multinormality test
deug	Exam marks for some students
disc	Rao's dissimilarity coefficient
discrimin	Linear Discriminant Analysis (descriptive statistic)
discrimin.coa	Discriminant Correspondence Analysis
dist.binary	Computation of Distance Matrices for Binary Data
dist.dudi	Computation of the Distance Matrix from a Statistical Triplet
dist.ktab	Mixed-variables coefficient of distance
dist.neig	Computation of the Distance Matrix associated to a Neighbouring Graph
dist.prop	Computation of Distance Matrices of Percentage Data
dist.quant	Computation of Distance Matrices on Quantitative Variables
dist.taxo	Taxonomy
divc	Rao's diversity coefficient also called quadratic entropy
divcmax	Maximal value of Rao's diversity coefficient also called quadratic entropy
dotchart.phylog	Representation of many quantitative variables in front of a phylogenetic tree
dotcircle	Representation of n values on a circle
doubs	Pair of Ecological Tables
dpcoa	Double principal coordinate analysis
dudi	Duality Diagram
dudi.acm	Multiple Correspondence Analysis
dudi.coa	Correspondence Analysis
dudi.dec	Decentred Correspondence Analysis
dudi.fca	Fuzzy Correspondence Analysis and Fuzzy Principal Components Analysis
dudi.fpca	Fuzzy Correspondence Analysis and Fuzzy Principal Components Analysis
dudi.hillsmith	Ordination of Tables mixing quantitative variables and factors
dudi.mix	Ordination of Tables mixing quantitative variables and factors
dudi.nsc	Non symmetric correspondence analysis
dudi.pca	Principal Component Analysis
dudi.pco	Principal Coordinates Analysis
dunedata	Dune Meadow Data

-- E --

ecg	Electrocardiogram data
ecomor	Ecomorphological Convergence
elec88	Electoral Data
enum.phylog	Plot phylogenies
escopage	K-tables of wine-tasting
euro123	Triangular Data

-- F --

fission	Fission pattern and heritable morphological traits
foucart	K-tables Correspondence Analysis with the same rows and the same columns
fourthcorner	Functions to compute the fourth-corner statistic
fourthcorner.rlq	Functions to compute the fourth-corner statistic
fourthcorner2	Functions to compute the fourth-corner statistic
friday87	Faunistic K-tables
fruits	Pair of Tables

-- G --

gearymoran	Moran's I and Geary'c randomization tests for spatial and phylogenetic autocorrelation
ggtortoises	Microsatellites of Galapagos tortoises populations
granulo	Granulometric Curves
gridrowcol	Complete regular grid analysis

-- H --

haar2level	Multi Level Decomposition of unidimensional data
hclust2phylog	Create phylogeny
hdpg	Genetic Variation In Human Populations
houmousr	Morphometric data set
housetasks	Contingency Table
humDNAm	human mitochondrial DNA restriction data

-- I --

ichtyo	Point sampling of fish community
inertia	Decomposition of inertia (i.e. contributions) in multivariate methods
inertia.dudi	Decomposition of inertia (i.e. contributions) in multivariate methods
irishdata	Geary's Irish Data
is.dudi	Duality Diagram
is.euclid	Is a Distance Matrix Euclidean?
is.ktab	the class of objects 'ktab' (K-tables)
is.orthobasis	Orthonormal basis for orthonormal transform

-- J --

julliot	Seed dispersal
jv73	K-tables Multi-Regions

-- K --

kcponds	Ponds in a nature reserve
kdist	the class of objects 'kdist' (K distance matrices)
kdist.cor	Mixed-variables coefficient of distance
kdist2ktab	Transformation of K distance matrices (object 'kdist') into K Euclidean representations (object 'ktab')
kdisteuclid	a way to obtain Euclidean distance matrices
kplot	Generic Function for Multiple Graphs in a K-tables Analysis
kplot.foucart	Multiple Graphs for the Foucart's Correspondence Analysis
kplot.mcoa	Multiple Graphs for a Multiple Co-inertia Analysis
kplot.mfa	Multiple Graphs for a Multiple Factorial Analysis
kplot.pta	Multiple Graphs for a Partial Triadic Analysis
kplot.sepan	Multiple Graphs for Separated Analyses in a K-tables
kplot.statis	Multiple Graphs of a STATIS Analysis
kplotsepan.coa	Multiple Graphs for Separated Analyses in a K-tables
kplotX.mdpcoa	Multiple Double Principal Coordinate Analysis
krandtest	Class of the Permutation Tests (in C).
krandxval	Two-fold cross-validation
ktab	the class of objects 'ktab' (K-tables)
ktab.data.frame	Creation of K-tables from a data frame
ktab.list.df	Creating a K-tables from a list of data frames.
ktab.list.dudi	Creation of a K-tables from a list of duality diagrams
ktab.match2ktabs	STATIS and Co-Inertia : Analysis of a series of paired ecological tables
ktab.util.addfactor	the class of objects 'ktab' (K-tables)
ktab.util.names	the class of objects 'ktab' (K-tables)
ktab.within	Process to go from a Within Analysis to a K-tables

-- L --

lascaux	Genetic/Environment and types of variables
ldist.ktab	Mixed-variables coefficient of distance
lingoes	Transformation of a Distance Matrix for becoming Euclidean
lizards	Phylogeny and quantitative traits of lizards
loocv	Leave-one-out cross-validation for a 'dudi'
loocv.between	Leave-one-out cross-validation for a 'bca'
loocv.discrimin	Leave-one-out cross-validation for a 'discrimin' analysis
loocv.dudi	Leave-one-out cross-validation for a 'dudi'

-- M --

macaca	Landmarks
macon	Wine Tasting
macroloire	Assemblages of Macroinvertebrates in the Loire River (France)
mafragh	Phyto-Ecological Survey
mantel.randtest	Mantel test (correlation between two distance matrices (in C).)
mantel.rtest	Mantel test (correlation between two distance matrices (in R).)
mantelkdist	Tests of randomization between distances applied to 'kdist' objetcs
maples	Phylogeny and quantitative traits of flowers
mariages	Correspondence Analysis Table
mbpcaiv	Multiblock principal component analysis with instrumental variables
mbpls	Multiblock partial least squares
mcoa	Multiple CO-inertia Analysis
mdpcoa	Multiple Double Principal Coordinate Analysis
meanfacwt	Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor)
meau	Ecological Data : sites-variables, sites-species, where and when
meaudret	Ecological Data : sites-variables, sites-species, where and when
mfa	Multiple Factorial Analysis
microsatt	Genetic Relationships between cattle breeds with microsatellites
mjrochet	Phylogeny and quantitative traits of teleos fishes
mld	Multi Level Decomposition of unidimensional data
mollusc	Faunistic Communities and Sampling Experiment
monde84	Global State of the World in 1984
morphosport	Athletes' Morphology
mstree	Minimal Spanning Tree
multispati	Multivariate spatial analysis
multispati.randtest	Multivariate spatial autocorrelation test (in C)
multispati.rtest	Multivariate spatial autocorrelation test

-- N --

nb2neig	Neighbourhood Graphs
neig	Neighbourhood Graphs
neig.util.GtoL	Neighbourhood Graphs
neig.util.LtoG	Neighbourhood Graphs
neig2mat	Neighbourhood Graphs
neig2nb	Neighbourhood Graphs
newick.eg	Phylogenetic trees in Newick format
newick2phylog	Create phylogeny
newick2phylog.addtools	Create phylogeny
niche	Method to Analyse a pair of tables : Environmental and Faunistic Data
niche.param	Method to Analyse a pair of tables : Environmental and Faunistic Data
nipals	Non-linear Iterative Partial Least Squares (NIPALS) algorithm
njplot	Phylogeny and trait of bacteria

-- O --

olympic	Olympic Decathlon
oribatid	Oribatid mite
originality	Originality of a species
orthobasis	Orthonormal basis for orthonormal transform
orthobasis.circ	Orthonormal basis for orthonormal transform
orthobasis.haar	Orthonormal basis for orthonormal transform
orthobasis.line	Orthonormal basis for orthonormal transform
orthobasis.mat	Orthonormal basis for orthonormal transform
orthobasis.neig	Orthonormal basis for orthonormal transform
ours	A table of Qualitative Variables

-- P --

p.adjust.4thcorner	Functions to combine and adjust the outputs 3-table methods
palm	Phylogenetic and quantitative traits of amazonian palm trees
pap	Taxonomy and quantitative traits of carnivora
pcaiv	Principal component analysis with respect to instrumental variables
pcaivortho	Principal Component Analysis with respect to orthogonal instrumental variables
pcoscaled	Simplified Analysis in Principal Coordinates
pcw	Distribution of of tropical trees along the Panama canal
perthi02	Contingency Table with a partition in Molecular Biology
phylog	Phylogeny
phylog.extract	Phylogeny
phylog.permut	Phylogeny
PI2newick	Import data files from Phylogenetic Independance Package
piosphere	Plant traits response to grazing
plot.4thcorner	Functions to compute the fourth-corner statistic
plot.bcaloocv	Leave-one-out cross-validation for a 'bca'
plot.betcoi	Between-Class Analysis
plot.betrlq	Between-Class RLQ analysis
plot.between	Between-Class Analysis
plot.coinertia	Coinertia Analysis
plot.corkdist	Tests of randomization between distances applied to 'kdist' objetcs
plot.discloocv	Leave-one-out cross-validation for a 'discrimin' analysis
plot.discrimin	Linear Discriminant Analysis (descriptive statistic)
plot.dpcoa	Double principal coordinate analysis
plot.foucart	K-tables Correspondence Analysis with the same rows and the same columns
plot.krandtest	Class of the Permutation Tests (in C).
plot.mcoa	Multiple CO-inertia Analysis
plot.mfa	Multiple Factorial Analysis
plot.multispati	Multivariate spatial analysis
plot.niche	Method to Analyse a pair of tables : Environmental and Faunistic Data
plot.orthobasis	Orthonormal basis for orthonormal transform
plot.pcaiv	Principal component analysis with respect to instrumental variables
plot.phylog	Plot phylogenies
plot.procuste	Simple Procruste Rotation between two sets of points
plot.pta	Partial Triadic Analysis of a K-tables
plot.randtest	Class of the Permutation Tests (in C).
plot.rlq	RLQ analysis
plot.sepan	Separated Analyses in a K-tables
plot.statis	STATIS, a method for analysing K-tables
plot.witcoi	Within-Class Analysis
plot.within	Within-Class Analysis
plot.witrlq	Within-Class RLQ analysis
poly2area	Graphical Display of Areas
predict.dudi	Projections of Supplementary Rows
prep.binary	Mixed-variables coefficient of distance
prep.circular	Mixed-variables coefficient of distance
prep.fuzzy	Mixed-variables coefficient of distance
prep.fuzzy.var	Fuzzy Correspondence Analysis and Fuzzy Principal Components Analysis
prep.mdpcoa	Multiple Double Principal Coordinate Analysis
presid2002	Results of the French presidential elections of 2002
print.4thcorner	Functions to compute the fourth-corner statistic
print.amova	Analysis of molecular variance
print.apqe	Apportionment of Quadratic Entropy
print.bcaloocv	Leave-one-out cross-validation for a 'bca'
print.betcoi	Between-Class Analysis
print.betdpcoa	Between- and within-class double principal coordinate analysis
print.betrlq	Between-Class RLQ analysis
print.between	Between-Class Analysis
print.coinertia	Coinertia Analysis
print.corkdist	Tests of randomization between distances applied to 'kdist' objetcs
print.discloocv	Leave-one-out cross-validation for a 'discrimin' analysis
print.discrimin	Linear Discriminant Analysis (descriptive statistic)
print.dpcoa	Double principal coordinate analysis
print.dudi	Duality Diagram
print.foucart	K-tables Correspondence Analysis with the same rows and the same columns
print.inertia	Decomposition of inertia (i.e. contributions) in multivariate methods
print.kdist	the class of objects 'kdist' (K distance matrices)
print.krandboot	Bootstrap simulations
print.krandtest	Class of the Permutation Tests (in C).
print.krandxval	Two-fold cross-validation
print.ktab	the class of objects 'ktab' (K-tables)
print.mcoa	Multiple CO-inertia Analysis
print.mfa	Multiple Factorial Analysis
print.multiblock	Display and summarize multiblock objects
print.multispati	Multivariate spatial analysis
print.neig	Neighbourhood Graphs
print.niche	Method to Analyse a pair of tables : Environmental and Faunistic Data
print.nipals	Non-linear Iterative Partial Least Squares (NIPALS) algorithm
print.orthobasis	Orthonormal basis for orthonormal transform
print.pcaiv	Principal component analysis with respect to instrumental variables
print.phylog	Phylogeny
print.procuste	Simple Procruste Rotation between two sets of points
print.pta	Partial Triadic Analysis of a K-tables
print.randboot	Bootstrap simulations
print.randtest	Class of the Permutation Tests (in C).
print.randxval	Two-fold cross-validation
print.rlq	RLQ analysis
print.sepan	Separated Analyses in a K-tables
print.statis	STATIS, a method for analysing K-tables
print.varipart	Partition of the variation of a response multivariate table by 2 explanatory tables
print.witcoi	Within-Class Analysis
print.witdpcoa	Between- and within-class double principal coordinate analysis
print.within	Within-Class Analysis
print.witrlq	Within-Class RLQ analysis
procella	Phylogeny and quantitative traits of birds
procuste	Simple Procruste Rotation between two sets of points
procuste.randtest	Monte-Carlo Test on the sum of the singular values of a procustean rotation (in C).
procuste.rtest	Monte-Carlo Test on the sum of the singular values of a procustean rotation (in R).
pta	Partial Triadic Analysis of a K-tables

-- Q --

quasieuclid

Transformation of a distance matrice to a Euclidean one

-- R --

radial.phylog	Plot phylogenies
randboot	Bootstrap simulations
randboot.multiblock	Bootstraped simulations for multiblock methods
randtest	Class of the Permutation Tests (in C).
randtest.amova	Permutation tests on an analysis of molecular variance (in C).
randtest.between	Monte-Carlo Test on the between-groups inertia percentage (in C).
randtest.betwit	Between- and within-class double principal coordinate analysis
randtest.coinertia	Monte-Carlo test on a Co-inertia analysis (in C).
randtest.discrimin	Monte-Carlo Test on a Discriminant Analysis (in C).
randtest.dpcoa	Permutation test for double principal coordinate analysis (DPCoA)
randtest.pcaiv	Monte-Carlo Test on the percentage of explained (i.e. constrained) inertia
randtest.pcaivortho	Monte-Carlo Test on the percentage of explained (i.e. constrained) inertia
randtest.procuste	Simple Procruste Rotation between two sets of points
randtest.rlq	RLQ analysis
randxval	Two-fold cross-validation
rankrock	Ordination Table
reciprocal.coa	Reciprocal scaling after a correspondence analysis
reconst	Reconstitution of Data from a Duality Diagram
reconst.coa	Reconstitution of Data from a Duality Diagram
reconst.pca	Reconstitution of Data from a Duality Diagram
redo.dudi	Duality Diagram
rhizobium	Genetic structure of two nitrogen fixing bacteria influenced by geographical isolation and host specialization
rhone	Physico-Chemistry Data
rlq	RLQ analysis
row.names.ktab	the class of objects 'ktab' (K-tables)
row.names<-.ktab	the class of objects 'ktab' (K-tables)
rpjdl	Avifauna and Vegetation
rtest	Class of the Permutation Tests (in R).
rtest.between	Monte-Carlo Test on the between-groups inertia percentage (in R).
rtest.discrimin	Monte-Carlo Test on a Discriminant Analysis (in R).
rtest.niche	Method to Analyse a pair of tables : Environmental and Faunistic Data
RV.randtest	Monte-Carlo Test on the sum of eigenvalues of a co-inertia analysis (in C++ with Rcpp).
RV.rtest	Monte-Carlo Test on the sum of eigenvalues of a co-inertia analysis (in R).
RVdist.randtest	Tests of randomization on the correlation between two distance matrices (in R).
RVintra.randtest	Monte-Carlo Test on the sum of eigenvalues of a within-class co-inertia analysis (in C++ with Rcpp).
RVkdist	Tests of randomization between distances applied to 'kdist' objetcs

-- S --

s.arrow	Plot of the factorial maps for the projection of a vector basis
s.chull	Plot of the factorial maps with polygons of contour by level of a factor
s.class	Plot of factorial maps with representation of point classes
s.corcircle	Plot of the factorial maps of a correlation circle
s.distri	Plot of a frequency distribution
s.hist	Display of a scatterplot and its two marginal histograms
s.image	Graph of a variable using image and contour
s.kde2d	Scatter Plot with Kernel Density Estimate
s.label	Scatter Plot
s.logo	Representation of an object in a graph by a picture
s.match	Plot of Paired Coordinates
s.match.class	Scatterplot of two sets of coordinates and a partionning into classes
s.multinom	Graph of frequency profiles (useful for instance in genetic)
s.traject	Trajectory Plot
s.value	Representation of a value in a graph
santacatalina	Indirect Ordination
sarcelles	Array of Recapture of Rings
scalefacwt	Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor)
scalewt	Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor)
scatter	Graphical representation of the outputs of a multivariate analysis
scatter.acm	Plot of the factorial maps in a Multiple Correspondence Analysis
scatter.coa	Plot of the factorial maps for a correspondence analysis
scatter.dudi	Plot of the Factorial Maps
scatter.fca	Plot of the factorial maps for a fuzzy correspondence analysis
scatter.nipals	Non-linear Iterative Partial Least Squares (NIPALS) algorithm
scatter.pco	Principal Coordinates Analysis
scatterutil	Graphical utility functions
scatterutil.base	Graphical utility functions
scatterutil.chull	Graphical utility functions
scatterutil.convrot90	Graphical utility functions
scatterutil.eigen	Graphical utility functions
scatterutil.ellipse	Graphical utility functions
scatterutil.eti	Graphical utility functions
scatterutil.eti.circ	Graphical utility functions
scatterutil.grid	Graphical utility functions
scatterutil.legend.bw.square	Graphical utility functions
scatterutil.legend.square.grey	Graphical utility functions
scatterutil.legendgris	Graphical utility functions
scatterutil.logo	Representation of an object in a graph by a picture
scatterutil.scaling	Graphical utility functions
scatterutil.sco	Graphical utility functions
scatterutil.star	Graphical utility functions
scatterutil.sub	Graphical utility functions
sco.boxplot	Representation of the link between a variable and a set of qualitative variables
sco.class	1D plot of a numeric score and a factor with labels
sco.distri	Representation by mean- standard deviation of a set of weight distributions on a numeric score
sco.gauss	Relationships between one score and qualitative variables
sco.label	1D plot of a numeric score with labels
sco.match	1D plot of a pair of numeric scores with labels
sco.quant	Graph to Analyse the Relation between a Score and Quantitative Variables
score	Graphs for One Dimension
score.acm	Graphs to study one factor in a Multiple Correspondence Analysis
score.coa	Reciprocal scaling after a correspondence analysis
score.mix	Graphs to Analyse a factor in a Mixed Analysis
score.pca	Graphs to Analyse a factor in PCA
scores.neig	Neighbourhood Graphs
scoreutil.base	Graphs for One Dimension
screeplot.dudi	Graphical representation of the outputs of a multivariate analysis
seconde	Students and Subjects
sepan	Separated Analyses in a K-tables
skulls	Morphometric Evolution
statico	STATIS and Co-Inertia : Analysis of a series of paired ecological tables
statico.krandtest	Monte-Carlo test on a Statico analysis (in C).
statis	STATIS, a method for analysing K-tables
steppe	Transect in the Vegetation
summary.4thcorner	Functions to compute the fourth-corner statistic
summary.between	Between-Class Analysis
summary.betwit	Between- and within-class double principal coordinate analysis
summary.coinertia	Coinertia Analysis
summary.corkdist	Tests of randomization between distances applied to 'kdist' objetcs
summary.dist	Is a Distance Matrix Euclidean?
summary.dpcoa	Double principal coordinate analysis
summary.dudi	Duality Diagram
summary.inertia	Decomposition of inertia (i.e. contributions) in multivariate methods
summary.mcoa	Multiple CO-inertia Analysis
summary.mfa	Multiple Factorial Analysis
summary.multiblock	Display and summarize multiblock objects
summary.multispati	Multivariate spatial analysis
summary.neig	Neighbourhood Graphs
summary.orthobasis	Orthonormal basis for orthonormal transform
summary.pcaiv	Principal component analysis with respect to instrumental variables
summary.pcaivortho	Principal Component Analysis with respect to orthogonal instrumental variables
summary.rlq	RLQ analysis
summary.sepan	Separated Analyses in a K-tables
summary.within	Within-Class Analysis
summary.witwit	Internal Correspondence Analysis
supcol	Projections of Supplementary Columns
supcol.coa	Projections of Supplementary Columns
supcol.dudi	Projections of Supplementary Columns
supdist	Projection of additional items in a PCO analysis
suprow	Projections of Supplementary Rows
suprow.acm	Projections of Supplementary Rows
suprow.coa	Projections of Supplementary Rows
suprow.dudi	Projections of Supplementary Rows
suprow.fca	Projections of Supplementary Rows
suprow.mix	Projections of Supplementary Rows
suprow.pca	Projections of Supplementary Rows
suprow.pta	Projections of Supplementary Rows for a Partial Triadic Analysis of K-tables
symbols.phylog	Representation of a quantitative variable in front of a phylogenetic tree
syndicats	Two Questions asked on a Sample of 1000 Respondents

-- T --

t.dudi	Duality Diagram
t.ktab	the class of objects 'ktab' (K-tables)
t3012	Average temperatures of 30 French cities
tab.names	the class of objects 'ktab' (K-tables)
tab.names.ktab	the class of objects 'ktab' (K-tables)
tab.names<-	the class of objects 'ktab' (K-tables)
tab.names<-.ktab	the class of objects 'ktab' (K-tables)
table.cont	Plot of Contingency Tables
table.dist	Graph Display for Distance Matrices
table.paint	Plot of the arrays by grey levels
table.phylog	Plot arrays in front of a phylogenetic tree
table.prepare	Plot of the Arrays
table.value	Plot of the Arrays
tarentaise	Mountain Avifauna
taxo.eg	Examples of taxonomy
taxo2phylog	Create phylogeny
testdim	Function to perform a test of dimensionality
testdim.multiblock	Selection of the number of dimension by two-fold cross-validation for multiblock methods
testdim.pca	Function to perform a test of dimensionality
tintoodiel	Tinto and Odiel estuary geochemistry
tithonia	Phylogeny and quantitative traits of flowers
tortues	Morphological Study of the Painted Turtle
toxicity	Homogeneous Table
triangle.biplot	Triangular Plotting
triangle.class	Triangular Representation and Groups of points
triangle.param	Triangular Plotting
triangle.plot	Triangular Plotting
triangle.posipoint	Triangular Plotting
trichometeo	Pair of Ecological Data

-- U --

ungulates	Phylogeny and quantitative traits of ungulates.
uniquewt.df	Elimination of Duplicated Rows in a Array

-- V --

varfacwt	Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor)
variance.phylog	The phylogenetic ANOVA
varipart	Partition of the variation of a response multivariate table by 2 explanatory tables
varwt	Compute or scale data using (weighted) means, variances and covariances (possibly for the levels of a factor)
vegtf	Vegetation in Trois-Fontaines
veuvage	Example for Centring in PCA

-- W --

wca	Within-Class Analysis
wca.coinertia	Within-class coinertia analysis
wca.dpcoa	Between- and within-class double principal coordinate analysis
wca.dudi	Within-Class Analysis
wca.rlq	Within-Class RLQ analysis
westafrica	Freshwater fish zoogeography in west Africa
withinpca	Normed within principal component analysis
witwit.coa	Internal Correspondence Analysis
witwitsepan	Internal Correspondence Analysis
woangers	Plant assemblages in woodlands of the conurbation of Angers (France)
worksurv	French Worker Survey (1970)

-- Y --

yanomama

Distance Matrices

-- Z --

zealand

Road distances in New-Zealand

-- misc --

[.dudi	Duality Diagram
[.kdist	the class of objects 'kdist' (K distance matrices)
[.krandtest	Class of the Permutation Tests (in C).
[.ktab	the class of objects 'ktab' (K-tables)
[[.krandtest	Class of the Permutation Tests (in C).