DGEobj-package |
DGEobj Package Overview |
addItem |
Add a data item |
addItems |
Add multiple data items |
annotateDGEobj |
Add annotations |
as.list.DGEobj |
Cast as a simple list |
baseType |
Get the baseType of an internal data item |
baseTypes |
Get a list of the available baseTypes |
dim.DGEobj |
Get the "assay" dimensions (row/genes by col/samples) |
dimnames.DGEobj |
Get the "assay" names (row/genes by col/samples) |
getAttributes |
Get all attributes |
getBaseType |
Retrieve data items by baseType |
getItem |
Retrieve a data item by name |
getItems |
Retrieve multiple data items by name |
getType |
Retrieve data items by type |
initDGEobj |
Initialize with base data (primaryAssayData, row annotations, col annotations) |
initDGEobjDef |
Instantiate a class DGEobjDef object. |
inventory |
Retrieve the object inventory |
newType |
Add a new type definition to a DGEobj |
print.DGEobj |
Print the Inventory |
resetDGEobj |
Reset to original data |
rmItem |
Removes a named data item |
setAttributes |
Set attributes |
showAttributes |
Print attributes |
showMeta |
Retrieve the Key/Value metadata attributes that have a character value and length of 1 |
showTypes |
Returns and prints the list of all defined types |
subset.DGEobj |
Subset internal row or column data |
[.DGEobj |
Subset with square brackets |