Differential Gene Expression (DGE) Analysis Results Data Object

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Documentation for package ‘DGEobj’ version 1.1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

DGEobj-package	DGEobj Package Overview
addItem	Add a data item
addItems	Add multiple data items
annotateDGEobj	Add annotations
as.list.DGEobj	Cast as a simple list
baseType	Get the baseType of an internal data item
baseTypes	Get a list of the available baseTypes
dim.DGEobj	Get the "assay" dimensions (row/genes by col/samples)
dimnames.DGEobj	Get the "assay" names (row/genes by col/samples)
getAttributes	Get all attributes
getBaseType	Retrieve data items by baseType
getItem	Retrieve a data item by name
getItems	Retrieve multiple data items by name
getType	Retrieve data items by type
initDGEobj	Initialize with base data (primaryAssayData, row annotations, col annotations)
initDGEobjDef	Instantiate a class DGEobjDef object.
inventory	Retrieve the object inventory
newType	Add a new type definition to a DGEobj
print.DGEobj	Print the Inventory
resetDGEobj	Reset to original data
rmItem	Removes a named data item
setAttributes	Set attributes
showAttributes	Print attributes
showMeta	Retrieve the Key/Value metadata attributes that have a character value and length of 1
showTypes	Returns and prints the list of all defined types
subset.DGEobj	Subset internal row or column data
[.DGEobj	Subset with square brackets