Automated Spectral Deconvolution, Alignment, and Metabolite
Identification in GC/MS-Based Untargeted Metabolomics
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Documentation for package ‘erah’ version 2.0.1
Help Pages
| alignComp | Alignment of compounds |
| alignComp-method | Alignment of compounds |
| alignList | Alignment list |
| alignList-method | Alignment list |
| compInfo | Information of a Compound |
| computeRIerror | computeRIerror |
| createdt | Creating Experiment Tables |
| createInstrumentalTable | Create Instrumental Table |
| createPhenoTable | Create Phenotype Table |
| dataList | Data list |
| dataList-method | Data list |
| deconvolveComp | Deconvolution of compounds in samples |
| deconvolveComp-method | Deconvolution of compounds in samples |
| eRah_DB-class | Class '"eRah_DB"' |
| expClasses | expClasses-method |
| expClasses-method | expClasses-method |
| export2CEF | Export spectra to CEF |
| export2MSP | Export spectra to MSP |
| findComp | Find a compound |
| identifyComp | Identification of compounds |
| identifyComp-method | Identification of compounds |
| idList | Identification list |
| idList-method | Identification list |
| importGMD | Import MSP files from GMD to R |
| importMSP | Import MSP files to R |
| MetaboSet-class | Class '"MetaboSet"' |
| metaData | metaData-method |
| metaData-method | metaData-method |
| mslib | MassBank Spectral Library |
| newExp | New Experiment |
| phenoData | phenoData-method |
| phenoData-method | phenoData-method |
| plotAlign | Plotting chromatographic profile with and without alignment |
| plotAlign-method | Plotting chromatographic profile with and without alignment |
| plotChr | Plotting sample chromatogram |
| plotChr-method | Plotting sample chromatogram |
| plotProfile | Plotting chromatographic profile |
| plotProfile-method | Plotting chromatographic profile |
| plotSpectra | Plotting Spectra |
| plotSpectra-method | Plotting Spectra |
| RawDataParameters-class | Class '"RawDataParameters"' |
| recMissComp | Missing compound recovery |
| recMissComp-method | Missing compound recovery |
| sampleInfo | Information of the samples |
| sampleInfo-method | Information of the samples |
| setAlPar | Set Alignment Parameters |
| setDecPar | Set Software Parameters |
| show-method | Show MetaboSet object |
| showRTRICurve | Show RT-RI curve |