R Client Library for CloudOS

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Documentation for package ‘cloudos’ version 0.2.0

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.get_search_json only used for v1 endpoint - creates v1 search json using the v2 style query
.v1_query_to_v2 Convert a v1 style query (moreFields) to v2 style (query). v2 queries are a superset of v1 queries. A list of v1 phenotype queries are equivalent to a set of nested v2 AND operators containing those phenotypes. This function builds the nested AND query from the flat list of v1 phenotypes.
cb_apply_filter_dry_run Dry run for 'cb_apply_query'
cb_apply_query Apply a query to a cohort
cb_create_cohort Create Cohort
cb_extract_samples Extract participants - WIP
cb_get_cohort_phenotypes Get data for phenotypes associated with a cohort
cb_get_genotypic_table Get genotypic table
cb_get_participants_table Get participant data table
cb_get_phenotype_metadata Phenotype metadata
cb_get_phenotype_statistics Get distribution of a phenotype in a cohort
cb_list_cohorts List cohorts
cb_load_cohort Get cohort information
cb_participant_count Participant Count
cb_plot_filters Plot filters
cb_search_phenotypes Search available phenotypes
cloudos_configure Configure cloudos
cloudos_whoami whoami
cohort-class cohort class