Computation of Bayes Factors for Common Designs

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Documentation for package ‘BayesFactor’ version 0.9.12-4.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

BayesFactor-package	Functions to compute Bayes factor hypothesis tests for common research designs and hypotheses.
%same%	Compare two objects to see if they are the 'same', for some loose definition of same
%termin%	Find a model term in a vector of model terms
*-method	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
*-method	General S4 class for representing multiple odds model comparisons, all against the same model
--method	General S4 class for representing multiple model probability comparisons
/-method	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
/-method	General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
/-method	General S4 class for representing multiple odds model comparisons, all against the same model
/-method	General S4 class for representing multiple model probability comparisons
anovaBF	Function to compute Bayes factors for ANOVA designs
as.BFBayesFactor	Function to coerce objects to the BFBayesFactor class
as.BFprobability	Function to coerce objects to the BFprobability class
BayesFactor	Functions to compute Bayes factor hypothesis tests for common research designs and hypotheses.
BFBayesFactor-class	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
BFBayesFactorList-class	General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
BFBayesFactorTop-class	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
BFcontingencyTable-class	General S4 classes for representing models for comparison
BFcorrelation-class	General S4 classes for representing models for comparison
BFindepSample-class	General S4 classes for representing models for comparison
BFInfo	Prints the version information for the BayesFactor package
BFlinearModel-class	General S4 classes for representing models for comparison
BFManual	Opens the HTML manual for the BayesFactor package
BFmodel-class	General S4 classes for representing models for comparison
BFodds-class	General S4 class for representing multiple odds model comparisons, all against the same model
BFoneSample-class	General S4 classes for representing models for comparison
BFprobability-class	General S4 class for representing multiple model probability comparisons
BFproportion-class	General S4 classes for representing models for comparison
compare	Compare two models, with respect to some data
compare-method	Compare two models, with respect to some data
contingencyTableBF	Function for Bayesian analysis of one- and two-sample designs
correlationBF	Function for Bayesian analysis of correlations
extractBF	Extract the Bayes factor from an object
extractBF-method	Extract the Bayes factor from an object
extractOdds	Extract the odds from an object
extractOdds-method	Extract the odds from an object
extractProbabilities	Extract the probabilities from an object
extractProbabilities-method	Extract the probabilities from an object
filterBF	Filter the elements of an object according to some pre-specified criteria
filterBF-method	General S4 class for representing multiple model probability comparisons
generalTestBF	Function to compute Bayes factors for general designs
is.na-method	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
linearReg.R2stat	Use R^2 statistic to compute Bayes factor for regression designs
lmBF	Function to compute Bayes factors for specific linear models
logCumMeanExpLogs	Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
logMeanExpLogs	Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
logSummaryStats	Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
meta.ttestBF	Function for Bayesian analysis of one- and two-sample designs
model.matrix,BFBayesFactor	Design matrices for Bayes factor linear models analyses.
model.matrix-method	Design matrices for Bayes factor linear models analyses.
newPriorOdds	Create prior odds from a Bayes factor object
nWayAOV	Use ANOVA design matrix to compute Bayes factors or sample posterior
oneWayAOV.Fstat	Use F statistic to compute Bayes factor for balanced one-way designs
options-BayesFactor	options() for package BayesFactor
plot.BFBayesFactor	Plot a Bayes factor object
plot.BFBayesFactorTop	Plot a Bayes factor top-down object
posterior	Sample from the posterior distribution of one of several models.
posterior-method	Sample from the posterior distribution of one of several models.
priorLogodds<-	Set prior log odds in an object
priorLogodds<--method	Set prior log odds in an object
priorOdds<-	Set prior odds in an object
priorOdds<--method	Set prior odds in an object
proportionBF	Function for Bayesian analysis of proportions
puzzles	Puzzle completion times from Hays (1994)
raceDolls	Hraba and Grant (1970) children's doll preference data
recompute	Recompute a Bayes factor computation or MCMC object.
recompute-method	Recompute a Bayes factor computation or MCMC object.
regressionBF	Function to compute Bayes factors for regression designs
t-method	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
t-method	General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
ttest.tstat	Use t statistic to compute Bayes factor for one- and two- sample designs
ttestBF	Function for Bayesian analysis of one- and two-sample designs
which.max-method	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
which.min-method	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
[-method	General S4 class for representing multiple Bayes factor model comparisons, all against the same model
[-method	General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
[-method	General S4 class for representing multiple odds model comparisons, all against the same model
[-method	General S4 class for representing multiple model probability comparisons