Computation of Bayes Factors for Common Designs


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Documentation for package ‘BayesFactor’ version 0.9.12-4.2

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BayesFactor-package Functions to compute Bayes factor hypothesis tests for common research designs and hypotheses.
%same% Compare two objects to see if they are the 'same', for some loose definition of same
%termin% Find a model term in a vector of model terms
*-method General S4 class for representing multiple Bayes factor model comparisons, all against the same model
*-method General S4 class for representing multiple odds model comparisons, all against the same model
--method General S4 class for representing multiple model probability comparisons
/-method General S4 class for representing multiple Bayes factor model comparisons, all against the same model
/-method General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
/-method General S4 class for representing multiple odds model comparisons, all against the same model
/-method General S4 class for representing multiple model probability comparisons
anovaBF Function to compute Bayes factors for ANOVA designs
as.BFBayesFactor Function to coerce objects to the BFBayesFactor class
as.BFprobability Function to coerce objects to the BFprobability class
BayesFactor Functions to compute Bayes factor hypothesis tests for common research designs and hypotheses.
BFBayesFactor-class General S4 class for representing multiple Bayes factor model comparisons, all against the same model
BFBayesFactorList-class General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
BFBayesFactorTop-class General S4 class for representing multiple Bayes factor model comparisons, all against the same model
BFcontingencyTable-class General S4 classes for representing models for comparison
BFcorrelation-class General S4 classes for representing models for comparison
BFindepSample-class General S4 classes for representing models for comparison
BFInfo Prints the version information for the BayesFactor package
BFlinearModel-class General S4 classes for representing models for comparison
BFManual Opens the HTML manual for the BayesFactor package
BFmodel-class General S4 classes for representing models for comparison
BFodds-class General S4 class for representing multiple odds model comparisons, all against the same model
BFoneSample-class General S4 classes for representing models for comparison
BFprobability-class General S4 class for representing multiple model probability comparisons
BFproportion-class General S4 classes for representing models for comparison
compare Compare two models, with respect to some data
compare-method Compare two models, with respect to some data
contingencyTableBF Function for Bayesian analysis of one- and two-sample designs
correlationBF Function for Bayesian analysis of correlations
extractBF Extract the Bayes factor from an object
extractBF-method Extract the Bayes factor from an object
extractOdds Extract the odds from an object
extractOdds-method Extract the odds from an object
extractProbabilities Extract the probabilities from an object
extractProbabilities-method Extract the probabilities from an object
filterBF Filter the elements of an object according to some pre-specified criteria
filterBF-method General S4 class for representing multiple model probability comparisons
generalTestBF Function to compute Bayes factors for general designs
is.na-method General S4 class for representing multiple Bayes factor model comparisons, all against the same model
linearReg.R2stat Use R^2 statistic to compute Bayes factor for regression designs
lmBF Function to compute Bayes factors for specific linear models
logCumMeanExpLogs Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
logMeanExpLogs Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
logSummaryStats Functions to compute the logarithm of the mean (and cumulative means) of vectors of logarithms
meta.ttestBF Function for Bayesian analysis of one- and two-sample designs
model.matrix,BFBayesFactor Design matrices for Bayes factor linear models analyses.
model.matrix-method Design matrices for Bayes factor linear models analyses.
newPriorOdds Create prior odds from a Bayes factor object
nWayAOV Use ANOVA design matrix to compute Bayes factors or sample posterior
oneWayAOV.Fstat Use F statistic to compute Bayes factor for balanced one-way designs
options-BayesFactor options() for package BayesFactor
plot.BFBayesFactor Plot a Bayes factor object
plot.BFBayesFactorTop Plot a Bayes factor top-down object
posterior Sample from the posterior distribution of one of several models.
posterior-method Sample from the posterior distribution of one of several models.
priorLogodds<- Set prior log odds in an object
priorLogodds<--method Set prior log odds in an object
priorOdds<- Set prior odds in an object
priorOdds<--method Set prior odds in an object
proportionBF Function for Bayesian analysis of proportions
puzzles Puzzle completion times from Hays (1994)
raceDolls Hraba and Grant (1970) children's doll preference data
recompute Recompute a Bayes factor computation or MCMC object.
recompute-method Recompute a Bayes factor computation or MCMC object.
regressionBF Function to compute Bayes factors for regression designs
t-method General S4 class for representing multiple Bayes factor model comparisons, all against the same model
t-method General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
ttest.tstat Use t statistic to compute Bayes factor for one- and two- sample designs
ttestBF Function for Bayesian analysis of one- and two-sample designs
which.max-method General S4 class for representing multiple Bayes factor model comparisons, all against the same model
which.min-method General S4 class for representing multiple Bayes factor model comparisons, all against the same model
[-method General S4 class for representing multiple Bayes factor model comparisons, all against the same model
[-method General S4 class for representing a collection of Bayes factor model comprisons, each against a different denominator
[-method General S4 class for representing multiple odds model comparisons, all against the same model
[-method General S4 class for representing multiple model probability comparisons