boral-package |
Bayesian Ordination and Regression AnaLysis (boral) |

about.distributions |
Distributions available in boral |

about.lvs |
Correlation structure for latent variables |

about.ranefs |
Including response-specific random intercepts in boral |

about.ssvs |
Stochastic search variable selection (SSVS) in boral |

about.traits |
Including species traits in boral |

boral |
Fitting boral (Bayesian Ordination and Regression AnaLysis) models |

boral.default |
Fitting boral (Bayesian Ordination and Regression AnaLysis) models |

calc.condlogLik |
Conditional log-likelihood for a fitted model |

calc.logLik.lv0 |
Log-likelihood for a model fitted with no latent variables |

calc.marglogLik |
Marginal log-likelihood for a fitted model |

calc.varpart |
Variance partitioning for a latent variable model |

coefsplot |
Caterpillar plots of the regression coefficients from a fitted model |

create.life |
\Sexpr[results=rd, stage=render]{lifecycle::badge("stable")} Simulate a Multivariate response matrix |

ds.residuals |
Dunn-Smyth Residuals for a fitted model |

fitted.boral |
Extract Model Fitted Values for an boral object |

get.dic |
Extract Deviance Information Criterion for a fitted model |

get.enviro.cor |
Extract covariances and correlations due to shared environmental responses |

get.hpdintervals |
Highest posterior density intervals for a fitted model |

get.mcmcsamples |
Extract MCMC samples from models |

get.measures |
Information Criteria for models |

get.more.measures |
Additional Information Criteria for models |

get.residual.cor |
Extract residual correlations and precisions from models |

lvsplot |
Plot the latent variables from a fitted model |

make.jagsboralmodel |
Write a text file containing a model for use into JAGS |

make.jagsboralnullmodel |
Write a text file containing a model for use into JAGS |

plot.boral |
Plots of a fitted boral object |

predict.boral |
Predict using a model |

print.boral |
Fitting boral (Bayesian Ordination and Regression AnaLysis) models |

print.summary.boral |
Summary of fitted boral object |

ranefsplot |
Caterpillar plots of response-specific random effects from a fitted model |

simulate.boral |
\Sexpr[results=rd, stage=render]{lifecycle::badge("stable")} Simulate a Multivariate response matrix |

summary.boral |
Summary of fitted boral object |

tidyboral |
Reformats output from a boral fit |