Estimate Genome Size of Polyploid Species Using k-Mer Frequencies

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Documentation for package ‘findGSEP’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

error_minimize	Minimize the Error for K-mer Frequency Fitting
error_minimize2	Tuning Final Fitting for Heterozygous Genomes
error_minimize2_raw	Tuning Final Fitting for Raw Heterozygous Genomes
error_minimize3	Minimize the Error for Remaining K-mer Frequency
error_minimize3_raw	Minimize the Error for Raw Remaining K-mer Frequency
error_minimize_raw	Minimize the Error for Raw K-mer Frequency Fitting
filter_peaks	Filter Peaks from K-mer Histogram
filter_peaks_raw	Filter Peaks from Raw K-mer Histogram
findGSEP	Estimate genome size of polyploid species using k-mer frequencies.
findGSE_raw	Estimate Genome Size Using Raw K-mer Frequencies
findGSE_sp	Estimate Genome Size Using K-mer Frequencies
get_het_pos	Filter Peaks from K-mer Histogram
initialize_start_time	Initialize Start Time
initial_count_recover	Recover Initial K-mer Count
initial_count_recover_raw	Recover Initial Raw K-mer Count
kmer_count_modify	Modify K-mer Frequency Before Fitting
kmer_count_modify_raw	Modify Raw K-mer Frequency Before Fitting