A General Algorithm to Enhance the Performance of Variable Selection Methods in Correlated Datasets

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Documentation for package ‘SelectBoost’ version 2.2.2

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A B C E F G L M N P R S T V

-- A --

AICc_BIC_glmnetB AICc and BIC for glmnet logistic models
AICc_glmnetB AICc and BIC for glmnet logistic models
alasso_enet_msgps_all Variable selection functions (all)
alasso_msgps_all Variable selection functions (all)
auto.analyze Find limits for selectboost analysis
auto.analyze.selectboost Find limits for selectboost analysis
autoboost Autoboost
autoboost.res.x Autoboost lasso diabetes first order.
autoboost.res.x.adapt Autoboost adaptative lasso diabetes first order.
autoboost.res.x2 Autoboost lasso diabetes second order.
autoboost.res.x2.adapt Autoboost adaptative lasso diabetes second order.

-- B --

BIC_glmnetB AICc and BIC for glmnet logistic models
boost Boost step by step functions
boost.adjust Boost step by step functions
boost.apply Boost step by step functions
boost.compcorrs Boost step by step functions
boost.correlation_sign Boost step by step functions
boost.findgroups Boost step by step functions
boost.normalize Boost step by step functions
boost.random Boost step by step functions
boost.select Boost step by step functions
boost.Xpass Boost step by step functions

-- C --

Cascade_confidence Confidence indices
Cascade_example Simulated Cascade network and inference
compsim Miscellaneous simulation functions
compsim.simuls Miscellaneous simulation functions

-- E --

enetf_msgps_AICc Variable selection functions
enetf_msgps_BIC Variable selection functions
enetf_msgps_Cp Variable selection functions
enetf_msgps_GCV Variable selection functions
enet_msgps_all Variable selection functions (all)

-- F --

fastboost Fastboost
fastboost.res.x Fastboost lasso diabetes first order.
fastboost.res.x.adapt Fastboost adaptative lasso diabetes first order.
fastboost.res.x2 Fastboost lasso diabetes second order.
fastboost.res.x2.adapt Fastboost adaptative lasso diabetes second order.
force.non.inc Non increasing post processinng step for selectboost analysis
F_score_C Simulations for reverse-engineering
F_score_PB Simulations for reverse-engineering
F_score_PB_075_075 Simulations for reverse-engineering
F_score_PB_095_075 Simulations for reverse-engineering
F_score_PB_W Simulations for reverse-engineering
F_score_PL Simulations for reverse-engineering
F_score_PL2 Simulations for reverse-engineering
F_score_PL2_tW Simulations for reverse-engineering
F_score_PL2_W Simulations for reverse-engineering
F_score_PSel Simulations for reverse-engineering
F_score_PSel.5 Simulations for reverse-engineering
F_score_PSel.5.e2 Simulations for reverse-engineering
F_score_PSel.e2 Simulations for reverse-engineering
F_score_PSel_W Simulations for reverse-engineering
F_score_robust Simulations for reverse-engineering

-- G --

group_func_1 Generate groups by thresholding.
group_func_2 Generate groups using community analysis.

-- L --

lasso_cascade Variable selection functions
lasso_cv_glmnet_1se Variable selection functions
lasso_cv_glmnet_1se_weighted Variable selection functions
lasso_cv_glmnet_all_5f Variable selection functions (all)
lasso_cv_glmnet_bin_1se Variable selection functions
lasso_cv_glmnet_bin_all Variable selection functions (all)
lasso_cv_glmnet_bin_min Variable selection functions
lasso_cv_glmnet_min Variable selection functions
lasso_cv_glmnet_min_weighted Variable selection functions
lasso_cv_lars_1se Variable selection functions
lasso_cv_lars_min Variable selection functions
lasso_glmnet_bin_AICc Variable selection functions
lasso_glmnet_bin_all Variable selection functions (all)
lasso_glmnet_bin_BIC Variable selection functions
lasso_msgps_AICc Variable selection functions
lasso_msgps_all Variable selection functions (all)
lasso_msgps_BIC Variable selection functions
lasso_msgps_Cp Variable selection functions
lasso_msgps_GCV Variable selection functions

-- M --

M Simulated Cascade network and inference
miscplot Miscellaneous plot functions

-- N --

Net Simulated Cascade network and inference
network.confidence-class Network confidence class.
net_confidence Confidence indices
net_confidence_.5 Confidence indices
net_confidence_thr Confidence indices
Net_inf_C Simulated Cascade network and inference
nv_C Simulations for reverse-engineering
nv_PB Simulations for reverse-engineering
nv_PB_075_075 Simulations for reverse-engineering
nv_PB_095_075 Simulations for reverse-engineering
nv_PB_W Simulations for reverse-engineering
nv_PL Simulations for reverse-engineering
nv_PL2 Simulations for reverse-engineering
nv_PL2_tW Simulations for reverse-engineering
nv_PL2_W Simulations for reverse-engineering
nv_PSel Simulations for reverse-engineering
nv_PSel.5 Simulations for reverse-engineering
nv_PSel.5.e2 Simulations for reverse-engineering
nv_PSel.e2 Simulations for reverse-engineering
nv_PSel_W Simulations for reverse-engineering
nv_robust Simulations for reverse-engineering

-- P --

plot-method plot_Selectboost_cascade
plot.matrix Miscellaneous plot functions
plot.selectboost Plot selectboost object
plot.summary.selectboost Plot a summary of selectboost results
plot_selectboost_cascade plot_Selectboost_cascade
predictive_positive_value_C Simulations for reverse-engineering
predictive_positive_value_PB Simulations for reverse-engineering
predictive_positive_value_PB_075_075 Simulations for reverse-engineering
predictive_positive_value_PB_095_075 Simulations for reverse-engineering
predictive_positive_value_PB_W Simulations for reverse-engineering
predictive_positive_value_PL Simulations for reverse-engineering
predictive_positive_value_PL2 Simulations for reverse-engineering
predictive_positive_value_PL2_tW Simulations for reverse-engineering
predictive_positive_value_PL2_W Simulations for reverse-engineering
predictive_positive_value_PSel Simulations for reverse-engineering
predictive_positive_value_PSel.5 Simulations for reverse-engineering
predictive_positive_value_PSel.5.e2 Simulations for reverse-engineering
predictive_positive_value_PSel.e2 Simulations for reverse-engineering
predictive_positive_value_PSel_W Simulations for reverse-engineering
predictive_positive_value_robust Simulations for reverse-engineering

-- R --

rerr AICc and BIC for glmnet logistic models
results_simuls_reverse_engineering_v3 Simulations for reverse-engineering
ridge_logistic AICc and BIC for glmnet logistic models

-- S --

SelectBoost SelectBoost
selectboost Selectboost_cascade
selectboost-method Selectboost_cascade
selectboost_cascade Selectboost_cascade
sensitivity_C Simulations for reverse-engineering
sensitivity_PB Simulations for reverse-engineering
sensitivity_PB_075_075 Simulations for reverse-engineering
sensitivity_PB_095_075 Simulations for reverse-engineering
sensitivity_PB_W Simulations for reverse-engineering
sensitivity_PL Simulations for reverse-engineering
sensitivity_PL2 Simulations for reverse-engineering
sensitivity_PL2_tW Simulations for reverse-engineering
sensitivity_PL2_W Simulations for reverse-engineering
sensitivity_PSel Simulations for reverse-engineering
sensitivity_PSel.5 Simulations for reverse-engineering
sensitivity_PSel.5.e2 Simulations for reverse-engineering
sensitivity_PSel.e2 Simulations for reverse-engineering
sensitivity_PSel_W Simulations for reverse-engineering
sensitivity_robust Simulations for reverse-engineering
sgpls_spls_all Variable selection functions (all)
simulation Miscellaneous simulation functions
simulation_cor Miscellaneous simulation functions
simulation_DATA Miscellaneous simulation functions
simulation_X Miscellaneous simulation functions
splsda_spls_all Variable selection functions (all)
spls_spls_all Variable selection functions (all)
summary.selectboost Summarize a selectboost analysis

-- T --

test.seq_C Simulations for reverse-engineering
test.seq_PB Simulations for reverse-engineering
test.seq_PB_075_075 Simulations for reverse-engineering
test.seq_PB_095_075 Simulations for reverse-engineering
test.seq_PB_W Simulations for reverse-engineering
test.seq_PL Simulations for reverse-engineering
test.seq_PL2 Simulations for reverse-engineering
test.seq_PL2_tW Simulations for reverse-engineering
test.seq_PL2_W Simulations for reverse-engineering
test.seq_PSel Simulations for reverse-engineering
test.seq_PSel.5 Simulations for reverse-engineering
test.seq_PSel.5.e2 Simulations for reverse-engineering
test.seq_PSel.e2 Simulations for reverse-engineering
test.seq_PSel_W Simulations for reverse-engineering
test.seq_robust Simulations for reverse-engineering
trajC0 Plot trajectories
trajC0.selectboost Plot trajectories

-- V --

varbvs_binomial_all Variable selection functions (all)
varbvs_linear_all Variable selection functions (all)
var_select Variable selection functions
var_select_all Variable selection functions (all)