Modeling and Inferring Gene Networks

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Documentation for package ‘GeneNet’ version 1.2.16

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

GeneNet-package	The GeneNet package
arth800	Time Series Expression Data for 800 Arabidopsis Thaliana Genes
arth800.descr	Time Series Expression Data for 800 Arabidopsis Thaliana Genes
arth800.expr	Time Series Expression Data for 800 Arabidopsis Thaliana Genes
arth800.mexpr	Time Series Expression Data for 800 Arabidopsis Thaliana Genes
arth800.name	Time Series Expression Data for 800 Arabidopsis Thaliana Genes
arth800.probe	Time Series Expression Data for 800 Arabidopsis Thaliana Genes
arth800.symbol	Time Series Expression Data for 800 Arabidopsis Thaliana Genes
cor0.test	Test of Vanishing (Partial) Correlation
ecoli	Microarray Time Series Data for 102 E. Coli Genes Genes
edge.info	Graphical Gaussian Models: Plotting the Network
extract.network	Graphical Gaussian Models: Assess Significance of Edges (and Directions)
ggm.estimate.pcor	Graphical Gaussian Models: Small Sample Estimation of Partial Correlation
ggm.simulate.data	Graphical Gaussian Models: Simulation of Data
ggm.simulate.pcor	Graphical Gaussian Models: Simulation of Networks
hotelling.transform	Variance-Stabilizing Transformations of the Correlation Coefficient
kappa2n	Relationship Between Sample Size and the Degree of Freedom of Correlation Distribution
n2kappa	Relationship Between Sample Size and the Degree of Freedom of Correlation Distribution
network.make.dot	Graphical Gaussian Models: Plotting the Network
network.make.graph	Graphical Gaussian Models: Plotting the Network
network.test.edges	Graphical Gaussian Models: Assess Significance of Edges (and Directions)
node.degree	Graphical Gaussian Models: Plotting the Network
num.nodes	Graphical Gaussian Models: Plotting the Network
z.transform	Variance-Stabilizing Transformations of the Correlation Coefficient