AIC_from_data |
Calculate AIC (Akaike's 'An Information Criterion') |
biodosetools |
'biodosetools' package |
calculate_aberr |
Aberration calculation functions |
calculate_aberr_disp_index |
Aberration calculation functions |
calculate_aberr_mean |
Aberration calculation functions |
calculate_aberr_power |
Aberration calculation functions |
calculate_aberr_table |
Calculate aberrations table |
calculate_aberr_u_value |
Aberration calculation functions |
calculate_aberr_var |
Aberration calculation functions |
calculate_genome_factor |
Calculate genomic conversion factor |
calculate_model_stats |
Calculate model statistics |
calculate_trans_rate_manual |
Calculate manual translocation rate |
calculate_trans_rate_sigurdson |
Calculate Sigurdson's translocation rate |
calculate_yield |
Calculate yield from dose |
calculate_yield_infimum |
Calculate theoretical yield infimum |
correct_boundary |
Correct boundary of irradiated fractions to be bounded by 0 and 1 |
correct_conf_int |
Correct yield confidence interval |
correct_negative_vals |
Correct negative values |
correct_yield |
Correct yields if they are below the curve |
dna_content_fractions_ihgsc |
DNA Content Fractions of Human Chromosomes (IHGSC) |
dna_content_fractions_morton |
DNA Content Fractions of Human Chromosomes (Morton 1991) |
estimate_hetero_mixed_poisson |
Heterogeneous dose estimation (Mixed Poisson model) |
estimate_partial_body_dolphin |
Partial-body dose estimation (Dolphin's method) |
estimate_whole_body_delta |
Whole-body dose estimation (delta method) |
estimate_whole_body_merkle |
Whole-body dose estimation (Merkle's method) |
fit |
Perform dose-effect fitting algorithm |
fit_glm_method |
Perform GLM (Generalised Linear Model) fitting |
fit_maxlik_method |
Perform max-likelihood optimization fitting |
get_deltamethod_std_err |
Get standard errors using delta method |
include_help |
Include Markdown help |
init_aberr_table |
Aberration calculation functions |
load_rmd_report |
Load RMarkdown report |
plot_estimated_dose_curve |
Plot dose estimation curve |
plot_fit_dose_curve |
Plot fit dose curve |
prepare_maxlik_count_data |
Prepare count data for max-likelihood optimization fitting |
project_yield |
Project yield into dose-effect fitting curve |
protracted_g_function |
Calculate protracted function G(x) |
run_app |
Run the Shiny Application |
R_factor |
Calculate R regression confidence factor |
yield_error_fun |
Calculate yield error |
yield_fun |
Calculate yield |