Flexible Regression Models for Survival Data
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Documentation for package ‘timereg’ version 2.0.5
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A B C D E F G I K L M N P Q R S T V W misc
-- A --
| aalen | Fit additive hazards model |
| aalen.des | For internal use |
| aalen.des2 | For internal use |
| aalenBase | For internal use |
| aalenBaseC | For internal use |
| additive.compSs | For internal use |
| as.character.Event | Event history object |
| as.matrix.Event | Event history object |
-- B --
| bmt | The Bone Marrow Transplant Data |
-- C --
| cd4 | The multicenter AIDS cohort study |
| check.missing | For internal use |
| cluster.index.timereg | For internal use |
| coef.aalen | For internal use |
| coef.comprisk | For internal use |
| coef.comprisk.ipw | For internal use |
| coef.cox.aalen | For internal use |
| coef.cox.ipw | Missing data IPW Cox |
| coef.cox.marg | For internal use |
| coef.dynreg | For internal use |
| coef.resmean | For internal use |
| coef.timecox | For internal use |
| coef.two.stage | For internal use |
| coefBase | For internal use |
| coefcox | For internal use |
| comp.risk | Competings Risks Regression |
| comprisk.ipw | For internal use |
| const | Identifies parametric terms of model |
| cox | Identifies proportional excess terms of model |
| cox.aalen | Fit Cox-Aalen survival model |
| cox.aalenBase | For internal use |
| cox.ipw | Missing data IPW Cox |
| cox.marg | For internal use |
| Cpred | For internal use |
| csl | CSL liver chirrosis data |
| Csmooth2B | For internal use |
| CsmoothB | For internal use |
| cum.residuals | Model validation based on cumulative residuals |
-- D --
| des.aalen | For internal use |
| diabetes | The Diabetic Retinopathy Data |
| dynreg | Fit time-varying regression model |
| dynregBase | For internal use |
-- E --
| Event | Event history object |
| event.split | EventSplit (SurvSplit). |
-- F --
| faster.reshape | For internal use |
| format.Event | Event history object |
-- G --
| Gprop.odds | Fit Generalized Semiparametric Proportional 0dds Model |
-- I --
| is.diag | For internal use |
-- K --
| kernel | For internal use |
| kmplot | For internal use |
| krylow.pls | Fits Krylow based PLS for additive hazards model |
-- L --
| localTimeReg | For internal use |
-- M --
| mela.pop | Melanoma data and Danish population mortality by age and sex |
| melanoma | The Melanoma Survival Data |
| mypbc | my version of the PBC data of the survival package |
-- N --
| nameestimate | For internal use |
| namematrix | For internal use |
| names2formula | For internal use |
-- P --
| pava | For internal use |
| pava.pred | Make predictions of predict functions in rows mononotone |
| pe.sasieni | Fits Proportional excess hazards model with fixed offsets |
| percen | For internal use |
| plot.aalen | Plots estimates and test-processes |
| plot.comprisk | For internal use |
| plot.cox.aalen | Plots estimates and test-processes |
| plot.cox.aalen2 | For internal use |
| plot.cum.residuals | Plots cumulative residuals |
| plot.cums | For internal use |
| plot.dynreg | Plots estimates and test-processes |
| plot.predict | For internal use |
| plot.predict.comprisk | For internal use |
| plot.predict.timereg | For internal use |
| plot.prop.excess | Plots estimates and test-processes |
| plot.resmean | For internal use |
| plot.restricted.residual.mean | For internal use |
| plot.timecox | Plots estimates and test-processes |
| plot.two.stage | For internal use |
| plotConfregion | For internal use |
| plotScore | For internal use |
| pred.cum | For internal use |
| pred.des | For internal use |
| pred.stratKM | For internal use |
| predict.aalen | Predictions for Survival and Competings Risks Regression for timereg |
| predict.comprisk | Predictions for Survival and Competings Risks Regression for timereg |
| predict.cox.aalen | Predictions for Survival and Competings Risks Regression for timereg |
| predict.timereg | Predictions for Survival and Competings Risks Regression for timereg |
| predict.two.stage | For internal use |
| predictpropodds | For internal use |
| prep.comp.risk | Set up weights for delayed-entry competing risks data for comp.risk function |
| prep.glm.comprisk | For internal use |
| print.aalen | Prints call |
| print.comprisk | Prints call |
| print.comprisk.ipw | For internal use |
| print.cox.aalen | Prints call |
| print.cox.ipw | Missing data IPW Cox |
| print.cox.marg | For internal use |
| print.cum.residuals | Prints call |
| print.dynreg | Prints call |
| print.Event | Event history object |
| print.pe.sasieni | For internal use |
| print.predict.timereg | For internal use |
| print.prop.excess | Prints call |
| print.resmean | For internal use |
| print.timecox | Prints call |
| print.two.stage | For internal use |
| prop | Identifies the multiplicative terms in Cox-Aalen model and proportional excess risk model |
| prop.excess | Fits Proportional excess hazards model |
| prop.excessBase | For internal use |
| prop.odds | Fit Semiparametric Proportional 0dds Model |
| prop.odds.gam | For internal use |
| prop.odds.subdist | Fit Semiparametric Proportional 0dds Model for the competing risks subdistribution |
| prop.odds.subdist.ipw | For internal use |
| pval | For internal use |
-- Q --
| qcut | Cut a variable |
-- R --
| rbind.Event | Event history object |
| read-design | For internal use |
| read.design | For internal use |
| read.surv | For internal use |
| recurrent.marginal.coxmean | Estimates marginal mean of recurrent events based on two cox models |
| recurrent.marginal.mean | Estimates marginal mean of recurrent events |
| res.mean | Residual mean life (restricted) |
| residualsTimereg | For internal use |
| restricted.residual.mean | Estimates restricted residual mean for Cox or Aalen model |
| risk.index | For internal use |
| rm.missing | For internal use |
-- S --
| semiaalen | For internal use |
| semicox | For internal use |
| semiregBase | For internal use |
| sindex.prodlim | For internal use |
| slaaop | For internal use |
| sTRACE | The TRACE study group of myocardial infarction |
| summary.aalen | Prints summary statistics |
| summary.comprisk | For internal use |
| summary.comprisk.ipw | For internal use |
| summary.cox.aalen | Prints summary statistics |
| summary.cox.ipw | Missing data IPW Cox |
| summary.cox.marg | For internal use |
| summary.cum.residuals | Prints summary statistics for goodness-of-fit tests based on cumulative residuals |
| summary.dynreg | Prints summary statistics |
| summary.Event | Event history object |
| summary.pe-sasieni | Fits Proportional excess hazards model with fixed offsets |
| summary.pe.sasieni | For internal use |
| summary.predict.timereg | For internal use |
| summary.prop.excess | Prints summary statistics |
| summary.resmean | For internal use |
| summary.restricted.residual.mean | For internal use |
| summary.timecox | Prints summary statistics |
| summary.two.stage | For internal use |
-- T --
| timecox | Fit Cox model with partly timevarying effects. |
| timecoxBase | For internal use |
| timereg.formula | For internal use |
| timetest | For internal use |
| TRACE | The TRACE study group of myocardial infarction |
| tTRACE | The TRACE study group of myocardial infarction |
| twin.clustertrunc | For internal use |
| two.stage | Fit Clayton-Oakes-Glidden Two-Stage model |
-- V --
| vcov.aalen | For internal use |
| vcov.comp.risk | For internal use |
| vcov.cox.aalen | For internal use |
| vcov.two.stage | For internal use |
-- W --
| wald.test | Makes wald test |
-- misc --
| [.Event | Event history object |