Generalised Joint Regression Modelling

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Documentation for package ‘GJRM’ version 0.2-6.5

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A B C D E F G H I J L M N O P R S T V W X

GJRM-package Generalised Joint Regression Modelling

-- A --

aCov Adjustment for the covariance matrix from a fitted gjrm model
adjCov Adjustment for the covariance matrix from a fitted gjrm model
adjCovSD Adjustment for the covariance matrix from a gjrm model fitted to complex survey data.
approx.CLM Internal Function
areds AREDS
ass.dp Internal Function
ass.ms Internal Function
AT Average treatment effect of a binary/continuous/discrete endogenous variable

-- B --

BCDF Internal Function
bcont Internal Function
bcont23 Internal Function
bcont3 Internal Function
bcont32 Internal Function
bcontROB Internal Function
bcontSurvGunivI Internal Function
bcontSurvGunivInform Internal Function
bcontSurvGunivI_ExcessHazard Internal Function
bcontSurvGunivL Internal Function
bcontSurvGunivL_ExcessHazard Internal Function
bcontSurvGunivMIXED Internal Function
bcontSurvGunivMIXED_ExcessHazard Internal Function
bcontSurvGunivMIXED_ExcessHazard_LeftTruncation Internal Function
bcontSurvGunivMIXED_LeftTruncation Internal Function
bcontSurvGuniv_ExcessHazard Internal Function
bcontSurvG_extended Internal Function
bCopulaCLMgHsCont Internal Function
bCopulaCLMgHsOrd Internal Function
bcorrec Internal Function
bcorrecDiscr Internal Function
bcorrecFuncs Internal Function
bdiscrcont Internal Function
bdiscrcont12 Internal Function
bdiscrcont13 Internal Function
bdiscrcont23 Internal Function
bdiscrdiscr11 Internal Function
bdiscrdiscr12 Internal Function
BiCDF Internal Function
bprobgHs Internal Function
bprobgHsBinROY Internal Function
bprobgHsCont Internal Function
bprobgHsCont2ROY Internal Function
bprobgHsCont3 Internal Function
bprobgHsCont3binTW Internal Function
bprobgHsCont3binTWSS Internal Function
bprobgHsCont3ROY Internal Function
bprobgHsCont3SS Internal Function
bprobgHsContSS Internal Function
bprobgHsContUniv Internal Function
bprobgHsContUniv3 Internal Function
bprobgHsContUnivBIN Internal Function
bprobgHsDiscr1 Internal Function
bprobgHsDiscr1ROY Internal Function
bprobgHsDiscr1SS Internal Function
bprobgHsDiscr2 Internal Function
bprobgHsDiscr2ROY Internal Function
bprobgHsDiscr2SS Internal Function
bprobgHsPO Internal Function
bprobgHsPO0 Internal Function
bprobgHsSS Internal Function
bprobgHstwoParC Internal Function

-- C --

conv.check Some convergence diagnostics
Cop1Cop2 Internal Function
copgHs Internal Function
copgHs2 Internal Function
copgHs3 Internal Function
copgHsAT Internal Function
copgHsCond Internal Function
copgHsCont Internal Function
copula.prob Copula probabilities (joint and conditional) from a fitted simultaneous model
CopulaCLM Internal fitting function
copulaReg.fit.post Internal Function
copulaSampleSel Internal fitting function
copulaSampleSel.fit.post Internal Function
cov.c Internal Function
cv.inform Cross validation for informative censoring univariate survival models

-- D --

distrExIntegrate Internal Function
distrHs Internal Function
distrHsAT Internal Function
distrHsAT1 Internal Function
distrHsATDiscr Internal Function
distrHsATDiscr2 Internal Function
distrHsDiscr Internal Function
dof.tr Internal Function
Dpens Differentiable penalties
Dpens2 Internal Function

-- E --

edf.loop Internal Function
enu.tr Internal Function
esp.tr Internal Function
eta.tr Internal Function

-- F --

form.check Internal Function
form.eq12 Internal Function

-- G --

g.tri Internal Function
g.triESS Internal Function
g.triSS Internal Function
gamls.upsv Internal Function
gamlss Generalised Additive Models for Location, Scale and Shape
gamlss.fit.post Internal Function
gamlssObject Fitted gamlssObject object
ggm.Deriv Internal Function
ggm.DerivOPT1 Internal Function
ggm.DerivOPT2 Internal Function
ggmtrust ggmtrust for penalised network
ggmtrust.path Internal Function
gjrm Generalised Joint Regression Models with Binary/Continuous/Discrete/Survival Margins
gjrmObject Fitted gjrm object
gt.bpm Gradient test

-- H --

H.tri Internal Function
H.triESS Internal Function
H.triSS Internal Function
hazsurv Post-estimation calculation of hazard, cumulative hazard and survival functions
hiv HIV Zambian data
hiv.polys HIV Zambian data

-- I --

imputeCounter Imputation of Counterfactual
imputeSS Missing values' imputation
inform.setup Internal Function
int.postcheck Diagnostic plots for discrete/continuous response margin
intB Internal Function

-- J --

jc.probs1 Copula probabilities (joint and conditional) from a fitted simultaneous model
jc.probs2 Copula probabilities (joint and conditional) from a fitted simultaneous model
jc.probs3 Copula probabilities (joint and conditional) from a fitted simultaneous model
jc.probs4 Copula probabilities (joint and conditional) from a fitted simultaneous model
jc.probs5 Copula probabilities (joint and conditional) from a fitted simultaneous model
jc.probs6 Copula probabilities (joint and conditional) from a fitted simultaneous model
jc.probs7 Copula probabilities (joint and conditional) from a fitted simultaneous model
jc.probs8 Copula probabilities (joint and conditional) from a fitted simultaneous model

-- L --

llpsi Internal Function
LM.bpm Lagrange Multiplier Test (Score Test)
lmc Linear Model Fitting with Constraints
logLik.ggmtrust Extract the log likelihood for a fitted copula model
logLik.lmc Extract the log likelihood for a fitted copula model
logLik.SemiParBIV Extract the log likelihood for a fitted copula model

-- M --

mb Nonparametric (worst-case and IV) Manski's bounds
meps MEPS data
mice.impute.copulaSS Internal Function
mm Internal Function
mmf Internal Function

-- N --

numch Internal Function
numgh Internal Function

-- O --

OR Causal odds ratio of a binary/continuous/discrete endogenous variable
overall.sv Internal Function
overall.svG Internal Function

-- P --

PDef Internal Function
PE Partial effect from a binary bivariate model
pen Internal Function
penCor Internal Function
plot.SemiParBIV Plotting function
polys.map Geographic map with regions defined as polygons
polys.setup Set up geographic polygons
PosDefCor Internal Function
post.check Diagnostic plots for discrete/continuous response margin
postVb Internal Function
pp Internal Function
pream.wm Internal Function
pred.gp Function to predict quantiles from GP and DGP distributions
pred.mvt Function to predict mean and variance of marginal distributions, as well as Kendall's tau
pred.var Internal Function
predict.CopulaCLM Prediction function
predict.SemiParBIV Prediction function
prev Estimated overall prevalence from sample selection model
print.AT Print an AT object
print.copulaSampleSel Print a copulaSampleSel object
print.gamlss Print a gamlss object
print.gjrm Print a gjrm object
print.mb Print an mb object
print.OR Print an OR object
print.PE Print an PE object
print.prev Print an prev object
print.RR Print an RR object
print.SemiParBIV Print a SemiParBIV object
print.SemiParROY Print a SemiParROY object
print.SemiParTRIV Print a SemiParTRIV object
print.summary.copulaSampleSel copulaSampleSel summary
print.summary.gamlss gamlss summary
print.summary.gjrm gjrm summary
print.summary.SemiParBIV SemiParBIV summary
print.summary.SemiParROY SemiParROY summary
print.summary.SemiParTRIV SemiParTRIV summary
probm Internal Function
probmS Internal Function
pscr Internal Function
pscr0 Internal Function
pTweed Internal Function

-- R --

r.resp Internal Function
Reg2Copost Internal Function
regH Internal Function
resp.check Plots for response variable
resp.CLM Internal Function
rIC Internal Function
rMVN Multivariate Normal Variates
rob.const Bootstrap procedure to help select the robust constant in a GAMLSS
rob.int Tool for tuning bounds of integral in robust models
RR Causal risk ratio of a binary/continuous/discrete endogenous variable

-- S --

S.m Internal Function
SemiParBIV Internal fitting function
SemiParBIV.fit Internal Function
SemiParBIV.fit.post Internal Function
SemiParROY Internal fitting function
SemiParROY.fit.post Internal Function
SemiParTRIV Internal fitting function
SemiParTRIV.fit.post Internal Function
sim.resp Internal Function
SS Internal Function
startsn Internal Function
summary.copulaSampleSel copulaSampleSel summary
summary.gamlss gamlss summary
summary.gjrm gjrm summary
summary.SemiParBIV SemiParBIV summary
summary.SemiParROY SemiParROY summary
summary.SemiParTRIV SemiParTRIV summary
survExcInd Internal Function
susu Internal Function
susutsn Internal Function

-- T --

teta.tr Internal Function
TRIapprox Internal Function
triprobgHs Internal Function
triprobgHsESS Internal Function
triprobgHsSS Internal Function

-- V --

vis.gam2 Internal Function
vis.gjrm Visualization function
VuongClarke Vuong and Clarke tests

-- W --

war Civil war data
working.comp Internal Function

-- X --

Xdpred Internal Function