Functions for Analyzing and Plotting Estuary Monitoring Data

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Documentation for package ‘SWMPrExtension’ version 2.2.5.1

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annual_range Annual Range Timeseries
annual_range.swmpr Annual Range Timeseries
assign_season Assign seasons to SWMP sampling data
base_map Create background map
cbm_spatial Spatial Data from Chesapeake Bay - Maryland
counties_4269 US County Map
create_sk_flextable_list Create a List of Flextable Objects
create_sk_national_ft_reserves Create a Flextable Object of Reserve Names
create_sk_national_ft_results Create a Flextable Object of Seasonal Kendall Results
elknmnut Nutrient Data from Elkhorn Slough - North Marsh Station
elksmwq Water Quality Data from Elkhorn Slough - South Marsh Station
elk_spatial Spatial Data from Elkhorn Slough
ft_col_names Convert Parameter Abbreviations
generate_results_table Filter Reformatted Seasonal Kendall Results
generate_station_table Filter Reformatted Seasonal Kendall Results
geographic_unique_stations Return a vector of geographically unique NERR Stations
get_reserve Identify NERRS reserve from metadata
get_shp_name Identify shapefile for NERRS reserve
get_sites Identify NERRS reserve stations from metadata
get_site_code Return NERRS reserve site code based on data in the data file
get_site_coordinates Identify NERRS sampling locations from metadata
historical_daily_range Historical Daily Range Timeseries
historical_daily_range.swmpr Historical Daily Range Timeseries
historical_range Historical Monthly/Seasonal Range Timeseries
historical_range.swmpr Historical Monthly/Seasonal Range Timeseries
import_local_nut Import local CDMO data
lm_p_labs P-Value labels for Plotting
load_shp_file Load and format shapefile for reserve level map
national_sk_map Reserve National Map with Seasonal Kendall Results
raw_boxplot Boxplots of raw data by user-defined season for a target year
raw_boxplot.swmpr Boxplots of raw data by user-defined season for a target year
remove_inf_and_nan Replace Inf/-Inf/NaN values
reserve_locs NERRS Sampling Location Data Frame
res_custom_map Local Reserve Map for Custom Stations
res_custom_sk_map Local Reserve Map With Seasonal Kendall Results for Custom Stations
res_local_map Local Reserve Map
res_national_map Reserve National Map
res_sk_map Local Reserve Map With Seasonal Kendall Results
sampling_stations Detailed NERRS site data
sampling_stations_backup A Backup of Detailed NERRS site data
seasonal_barplot Cumulative Bar Plot
seasonal_barplot.swmpr Cumulative Bar Plot
seasonal_boxplot Seasonal boxplots
seasonal_boxplot.swmpr Seasonal boxplots
seasonal_dot Seasonal Dot Plot
seasonal_dot.swmpr Seasonal Dot Plot
set_date_breaks Set reasonable date breaks
set_date_breaks_minor Select reasonable minor breaks for 'scale_x_datetime'
set_date_break_labs Set reasonable date breaks labels
sk_seasonal Seasonal Kendall Analysis for Seasonal Data
sk_seasonal.swmpr Seasonal Kendall Analysis for Seasonal Data
sk_tidy Tidy Seasonal Kendall Results
std_param_check Standard Parameter Check
summarise_handoff_files Summarise Hand-off Files from Reserve Level Reports
threshold_criteria_plot Water Quality Threshold Plot For Parameters With Criteria
threshold_criteria_plot.swmpr Water Quality Threshold Plot For Parameters With Criteria
threshold_identification Tabulate Threshold Exceedances
threshold_identification.swmpr Tabulate Threshold Exceedances
threshold_percentile_plot Threshold Percentile Plot
threshold_percentile_plot.swmpr Threshold Percentile Plot
threshold_summary Summary Plots for Threshold Identification
threshold_summary.swmpr Summary Plots for Threshold Identification
title_labeler Generate Plot Title Based on NERR Site ID
update_sampling_stations Update reserve sampling stations
us_4269 US State Map
y_count_labeler Generate y-axis Label Based on SWMP Parameter Abbreviation
y_labeler Generate y-axis Label Based on SWMP Parameter Abbreviation