RANKS-package |
RANKS: Ranking of Nodes with Kernelized Score Functions |
cauchy.kernel |
Kernel functions |
compute.acc |
Utility functions |
compute.F |
Utility functions |
do.cv.data |
Utility functions |
do.GBA |
GBA cross-validation experiments with multiple classes |
do.loo.RANKS |
RANKS leave-one-out experiments with multiple classes |
do.RANKS |
RANKS cross-validation experiments with multiple classes |
do.RW |
Random walk cross-validation experiments with multiple classes |
do.RWR |
Random walk with restart cross-validation experiments with multiple classes |
do.stratified.cv.data |
Utility functions |
eav.score |
Multiple vertex score functions |
eav.score-method |
Multiple vertex score functions |
eav.score-methods |
Multiple vertex score functions |
eav.w.score |
Multiple vertex score functions - weighted version |
eav.w.score-method |
Multiple vertex score functions - weighted version |
eav.w.score-methods |
Multiple vertex score functions - weighted version |
find.optimal.thresh.cv |
Function to find the optimal RANKS score thereshold |
gaussian.kernel |
Kernel functions |
GBAmax |
Guilt By Association (GBA) using the maximum rule |
GBAsum |
Guilt By Association (GBA) using the sum rule |
identity.kernel |
Kernel functions |
inv.multiquadric.kernel |
Kernel functions |
ker.score.classifier.cv |
Multiple cross-validation with RANKS for classification |
ker.score.classifier.holdout |
RANKS held-out procedure for a single class |
ker.score.cv |
RANKS cross-validation for a single class |
ker.score.holdout |
RANKS held-out procedure for a single class |
Kernel functions |
Kernel functions |
KNN.score |
Multiple vertex score functions |
KNN.score-method |
Multiple vertex score functions |
KNN.score-methods |
Multiple vertex score functions |
KNN.w.score |
Multiple vertex score functions - weighted version |
KNN.w.score-method |
Multiple vertex score functions - weighted version |
KNN.w.score-methods |
Multiple vertex score functions - weighted version |
label.prop |
Label propagation |
labelsfromscores |
Utility functions |
laplacian.kernel |
Kernel functions |
linear.kernel |
Kernel functions |
Methods for scoring a single vertex |
Single vertex score functions |
Methods for scoring a single vertex - weighted version |
Single vertex score functions - weighted version |
Methods for scoring multiple vertices |
Multiple vertex score functions |
Methods for scoring multiple vertices - weighted version |
Multiple vertex score functions - weighted version |
multiple.ker.score.cv |
RANKS multiple cross-validation for a single class |
multiple.ker.score.thresh.cv |
Function for RANKS multiple cross-validation and optimal threshold finding for a single class |
Multiple.labels.from.scores |
Utility functions |
multiple.RW.cv |
Random walk, GBA and labelprop multiple cross-validation for a single class |
NN.score |
Multiple vertex score functions |
NN.score-method |
Multiple vertex score functions |
NN.score-methods |
Multiple vertex score functions |
NN.w.score |
Multiple vertex score functions - weighted version |
NN.w.score-method |
Multiple vertex score functions - weighted version |
NN.w.score-methods |
Multiple vertex score functions - weighted version |
norm1 |
Utility functions |
p.step.rw.kernel |
Random walk kernel |
p.step.rw.kernel-method |
Random walk kernel |
p.step.rw.kernel-methods |
Random walk kernel |
poly.kernel |
Kernel functions |
RANKS |
RANKS: Ranking of Nodes with Kernelized Score Functions |
RW |
Random walk on a graph |
RW.cv |
Random walk, GBA and labelprop cross-validation for a single class |
rw.kernel |
Random walk kernel |
rw.kernel-method |
Random walk kernel |
rw.kernel-methods |
Random walk kernel |
RWR |
Random walk with Restart on a graph |
selection.test |
Utility functions |
single.eav.score |
Single vertex score functions |
single.eav.score-method |
Single vertex score functions |
single.eav.score-methods |
Single vertex score functions |
single.eav.w.score |
Single vertex score functions - weighted version |
single.eav.w.score-method |
Single vertex score functions - weighted version |
single.eav.w.score-methods |
Single vertex score functions - weighted version |
single.KNN.score |
Single vertex score functions |
single.KNN.score-method |
Single vertex score functions |
single.KNN.score-methods |
Single vertex score functions |
single.KNN.w.score |
Single vertex score functions - weighted version |
single.KNN.w.score-method |
Single vertex score functions - weighted version |
single.KNN.w.score-methods |
Single vertex score functions - weighted version |
single.NN.score |
Single vertex score functions |
single.NN.score-method |
Single vertex score functions |
single.NN.score-methods |
Single vertex score functions |
single.NN.w.score |
Single vertex score functions - weighted version |
single.NN.w.score-method |
Single vertex score functions - weighted version |
single.NN.w.score-methods |
Single vertex score functions - weighted version |
single.WSLD.score |
Single vertex score functions |
single.WSLD.score-method |
Single vertex score functions |
single.WSLD.score-methods |
Single vertex score functions |
Unit.sphere.norm |
Utility functions |
WSLD.score |
Multiple vertex score functions |
WSLD.score-method |
Multiple vertex score functions |
WSLD.score-methods |
Multiple vertex score functions |