GenomicTools.fileHandler-package |
R Package To Handle Files From Genomic Data GenomicTools.fileHandler is a loose collection of I/O Functions Needed in Genomic Data Analysis |
example.bed |
Example Gene Annotation in Bed-Format |
example.fasta |
Example Sequencing Reads in fasta-Format |
example.fastq |
Example Sequencing Reads in fastq-Format |
example.gff |
Example Gene Annotation in gff-Format |
example.gtf |
Example Gene Annotation in gtf-Format |
example.ped |
Example Variant data in ped/map-Format |
example.vcf |
Example Variant data in vcf-Format |
example2.gtf.gz |
Example Gene Annotation in zipped gtf-Format |
exportBed |
Exporting a Bed File. |
exportFA |
Exporting a Fasta File. |
importBed |
Importing a Bed File. |
importBlastTab |
Import a Tab Delimited Blast Output File |
importFA |
Importing a Fasta File. |
importFeatureCounts |
Import from FeatureCounts |
importFQ |
Importing a Fastq File. |
importGFF |
importGFF |
importGFF3 |
importGFF3 |
importGTF |
Import a GTF File |
importPED |
importPED |
importSTARLog |
importSTARLog |
importVCF |
importVCF |
importXML |
importXML |
plotTotalReads |
plotTotalReads |
plotUniquelyMappedReads |
plotUniquelyMappedReads |
prereadGTF |
prereadGTF |
print.bed |
Print a bed Object |
print.fa |
Print a fa Object |
print.featureCounts |
Print a featureCounts Object |
print.fq |
Print a fq Object |
print.gtf |
Print a gtf Object |
print.pedMap |
Print a pedMap Object |
print.vcf |
Print a vcf Object |
summary.bed |
Summary of a bed Object |
summary.fa |
Summary of a fa Object |
summary.featureCounts |
Summary of a featureCounts Object |
summary.fq |
Summary of a fq Object |
summary.gtf |
Summary of a gtf Object |
summary.STARLog |
Summary of a STARLog Object |