camtrapR-package |
Overview of the functions in the camtrapR package |
activityDensity |
Plot kernel density estimation of single-species activity |
activityHistogram |
Plot histogram of single-species activity |
activityOverlap |
Plot overlapping kernel densities of two-species activities |
activityRadial |
Radial plots of single-species activity |
addCopyrightTag |
Write a copyright tag into JPEG image metadata |
addToPath |
Add a directory to PATH temporarily |
appendSpeciesNames |
Add or remove species names from JPEG image filenames |
cameraOperation |
Create a camera trap station operation matrix |
camtrapR |
Overview of the functions in the camtrapR package |
camtraps |
Sample camera trap station information |
camtrapsMultiSeason |
Sample multi-season camera trap station information |
checkSpeciesIdentification |
Consistency check on species image identification |
checkSpeciesNames |
Check species names against the ITIS taxonomic database |
commOccu-class |
commOccu objects |
communityModel |
Create a community (multi-species) occupancy model for JAGS or Nimble |
createSpeciesFolders |
Create species directories for species identification |
createStationFolders |
Create camera trap station directories for raw camera trap images |
detectionHistory |
Species detection histories for occupancy analyses |
detectionMaps |
Generate maps of observed species richness and species presences by station |
exifTagNames |
Show Exif metadata of JPEG images or other image or video formats |
filterRecordTable |
Filter species record table for temporal independence |
fit-method |
Fit a community (multi-species) occupancy model |
fixDateTimeOriginal |
Fix DateTimeOriginal Exif metadata tag in Reconyx Hyperfire cameras |
getSpeciesImages |
Collect all images of a species |
imageRename |
Copy and rename images based on camera trap station ID and creation date |
OCRdataFields |
Optical character recognition (OCR) from data fields in digital images |
plot_coef |
Plot effect sizes of covariates in community occupancy model |
plot_coef-method |
Plot effect sizes of covariates in community occupancy model |
plot_effects |
Plot Marginal Effects of Covariates |
plot_effects-method |
Plot Marginal Effects of Covariates |
predict |
Predictions from community occupancy models |
predict-method |
Predictions from community occupancy models |
recordTable |
Generate a species record table from camera trap images and videos |
recordTableIndividual |
Generate a single-species record table with individual identification from camera trap images or videos |
recordTableIndividualSample |
Sample single-species record table with custom metadata from camera trap images |
recordTableIndividualSampleMultiSeason |
Sample single-species multi-season record table with custom metadata from camera trap images |
recordTableSample |
Sample species record table from camera trap images |
recordTableSampleMultiSeason |
Sample multi-season species record table from camera trap images |
spatialDetectionHistory |
Generate a 'capthist' object for spatial capture-recapture analyses from camera-trapping data |
summary-method |
Summarize community occupancy model |
surveyDashboard |
Shiny dashboard for summarizing and analyzing camera trap survey data |
surveyReport |
Create a report about a camera trapping survey and species detections |
timeShiftImages |
Apply time shifts to JPEG image metadata |
timeShiftTable |
Sample camera trap time shift table |
writeDateTimeOriginal |
Write values to DateTimeOriginal tag in image metadata |