CAnopy IMage ANalysis

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Documentation for package ‘rcaiman’ version 1.2.2

• DESCRIPTION file.
• Package NEWS.

Help Pages

apply_thr	Apply threshold
azimuth_image	Build azimuth image
calc_co	Calculate canopy openness
calc_diameter	Calculate diameter
calc_relative_radius	Calculate relative radius
calc_zenith_colrow	Calculate zenith raster coordinates
calibrate_lens	Calibrate lens
chessboard	Do chessboard segmentation
cie_sky_model_raster	CIE sky model raster
colorfulness	Quantify colorfulness
correct_vignetting	Correct vignetting effect
crop_caim	Crop a canopy image from a file
crosscalibrate_lens	Cross-calibrate lens
defuzzify	Defuzzify a fuzzy classification
enhance_caim	Enhance canopy image
expand_noncircular	Expand non-circular
extract_dn	Extract digital numbers
extract_feature	Extract feature
extract_radiometry	Extract radiometry data
extract_rl	Extract relative luminance
extract_sky_points	Extract sky points
extract_sky_points_simple	Extract sky points
extract_sun_coord	Extract sun coordinates
find_sky_pixels	Find sky pixels
find_sky_pixels_nonnull	Find sky pixels following the non-null criteria
fisheye_to_equidistant	Fisheye to equidistant
fisheye_to_pano	Fisheye to panoramic
fit_cie_sky_model	Fit CIE sky model
fit_coneshaped_model	Fit cone-shaped model
fit_trend_surface	Fit a trend surface to sky digital numbers
fix_reconstructed_sky	Fix reconstructed sky
gbc	Gamma back correction
interpolate_sky_points	Interpolate sky points
lens	Access the lens database
local_fuzzy_thresholding	Local fuzzy thresholding
masking	Image masking
mask_hs	Mask hemisphere
mask_sunlit_canopy	Mask sunlit canopy
membership_to_color	Compute the membership to a target color
normalize	Normalize data
obia	Do object-based image analysis of canopy photographs
ootb_mblt	Out-of-the-box model-based local thresholding
ootb_obia	Out-of-the-box object-based image analysis of canopy photographs
ootb_sky_reconstruction	Out-of-the-box sky reconstruction
optim_normalize	Optimize normalize parameters
percentage_of_clipped_highlights	Percentage of clipped highlights
polar_qtree	Do quad-tree segmentation in the polar space
qtree	Do quad-tree segmentation
read_bin	Read binarized images
read_caim	Read a canopy image from a file
read_caim_raw	Read a canopy image from a raw file
read_manual_input	Read manual input
read_opt_sky_coef	Read optimized sky coefficients
regional_thresholding	Regional thresholding
rings_segmentation	Do rings segmentation
row_col_from_zenith_azimuth	Obtain row and col numbers from zenith and azimuth angles
sectors_segmentation	Do sectors segmentation
sky_grid_segmentation	Do sky grid segmentation
test_lens_coef	Test lens projection functions
thr_isodata	Calculate a threshold with the isodata method
thr_mblt	Calculate thresholds with the model-based method
write_bin	Write binarized images
write_caim	Write canopy image
write_sky_points	Write sky points
write_sun_coord	Write sun coordinates
zenith_azimuth_from_row_col	Obtain zenith and azimuth angles from row and col numbers
zenith_image	Build Zenith image