Rapid Manipulation of the Variant Call Format (VCF)

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Documentation for package ‘vcfppR’ version 0.4.5

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vcfppR-package vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
heterozygosity calculate the number of heterozygous SNPs for each sample
vcfcomp Compare two VCF/BCF files reporting various statistics
vcfpopgen count the heterozygous sites per sample in the VCF/BCF
vcfppR vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
vcfreader API for manipulating the VCF/BCF.
vcfsummary summarize the various variant types at both variant level and sample level.
vcftable read VCF/BCF contents into R data structure
vcfwriter API for writing the VCF/BCF.