HMPTrees-package |
Object Oriented Data Analysis of Taxonomic Trees |
checkTreeValidity |
Check Validity of an RDP-Based Taxonomic Tree |
compareTwoDataSets |
Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Sets of RDP-Based Taxonomic Trees |
createAndPlot |
Create and Plot a Tree from a Data Set |
createTrees |
Create a Tree Object |
displayLegend |
Displays Tree Plot Legend |
formatData |
Formats a Data Set |
generateTree |
Generate Test Trees |
getMLEandLoglike |
Get MLE and Log Likelihood of a Data Set |
HMPTrees |
Object Oriented Data Analysis of Taxonomic Trees |
mergeDataSets |
Merge Multiple Data Sets |
pairedCompareTwoDataSets |
Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Paired Sets of RDP-Based Taxonomic Trees |
plotTree |
Plots a Tree Object |
plotTreeDataMDS |
Plot an MDS Plot of a Group of Trees |
saliva |
Saliva Data Set |
stool |
Stool Data Set |
throat |
Throat Data Set |
trimToTaxaLevel |
Trim a Tree to a Given Level |