Statistical Object Oriented Data Analysis of RDP-Based Taxonomic
Trees from Human Microbiome Data
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘HMPTrees’ version 1.4
Help Pages
| HMPTrees-package | Object Oriented Data Analysis of Taxonomic Trees |
| checkTreeValidity | Check Validity of an RDP-Based Taxonomic Tree |
| compareTwoDataSets | Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Sets of RDP-Based Taxonomic Trees |
| createAndPlot | Create and Plot a Tree from a Data Set |
| createTrees | Create a Tree Object |
| displayLegend | Displays Tree Plot Legend |
| formatData | Formats a Data Set |
| generateTree | Generate Test Trees |
| getMLEandLoglike | Get MLE and Log Likelihood of a Data Set |
| HMPTrees | Object Oriented Data Analysis of Taxonomic Trees |
| mergeDataSets | Merge Multiple Data Sets |
| pairedCompareTwoDataSets | Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Paired Sets of RDP-Based Taxonomic Trees |
| plotTree | Plots a Tree Object |
| plotTreeDataMDS | Plot an MDS Plot of a Group of Trees |
| saliva | Saliva Data Set |
| stool | Stool Data Set |
| throat | Throat Data Set |
| trimToTaxaLevel | Trim a Tree to a Given Level |