as_igraph |
Convert plexi graph data to igraph |
as_plexi_graph |
Convert adjacency matrix to plexi graph data |
distance |
Function to calculate distance between two vectors |
ednn |
Encoder decoder neural network (EDNN) function |
ednn_io_prepare |
Preparing the input and output of the EDNN for a multiplex graph |
example_data |
Example Data |
network_gen |
Multiplex Network Generation |
plexi_distance_test1_isn |
Test the extremeness of embedding distances of local neighbors. |
plexi_distance_test_isn |
Test the embedding distances of local neighbors change between the two conditions for ISNs. |
plexi_embedding |
Calculate the embedding space for a multiplex network |
plexi_embedding_2layer |
Calculate the embedding space for a two layer multiplex network |
plexi_node_detection_2layer |
Detecting the nodes whose local neighbors change bweteen the two conditions. |
plexi_node_distance |
Detecting the nodes whose local neighbors change between the two conditions for ISNs. |
p_val_count |
Calculate p.value for x given set of null values using counts |
p_val_norm |
Calculate p.value for x given set of null values using a Gaussian null pdf |
p_val_rank |
Calculate p.value for x given a set of null values using ranks |
Rank |
Ranking a vector |
rep_random_walk |
Repetitive Fixed-length (weighted) random walk algorithm |
subgraph_difference_plot |
Visualization of a difference subgroup using a circular graph |
subgraph_plot |
Visualization of a subgroup using a circular graph |
weightd_random_walk |
Weighted Random Walk algorithm |