BBA |
Dataset of setophaga caerulescens obtained from the Pennsylvania Atlas of Breeding Birds. |
BBS |
Dataset of setophaga caerulescens obtained from the North American Breeding Bird survey across Pennsylvania state. |
BBSColinusVirginianus |
Dataset of Colinus Virginianus obtained from the North American Breeding Bird survey across Alabama state. |
blockedCV |
_blockedCV_: run spatial blocked cross-validation on the integrated model. |
blockedCV-class |
Export class blockedCV |
bruSDM-class |
Export bru_sdm class |
bruSDM_predict-class |
Export class predict_bru_sdm |
changeCoords |
_changeCoords_: function used to change coordinate names. |
checkCoords |
_checkCoords_: function used to check coordinate names. |
checkVar |
_checkVar_: Function used to check variable names. |
data2ENV |
_data2ENV_: function used to move objects from one environment to another. |
dataOrganize |
R6 class to assist in reformatting the data to be used in dataSDM. |
dataSDM |
R6 class for creating a 'dataSDM' object. |
dataSet |
Internal function used to standardize datasets, as well as assign metadata. |
datasetOut |
_datasetOut_: function that removes a dataset out of the main model, and calculates some cross-validation score. |
datasetOut-class |
Export class bru_sdm_leave_one_out |
eBird |
data.frame object containing solitary tinamou observations from eBird |
elev_raster |
Raster object containing the elevation across Pennsylvania state. |
fitISDM |
_fitISDM_: function used to run the integrated model. |
Gbif |
data.frame object containing solitary tinamou observations from Gbif |
intModel |
_intModel_: Function used to initialize the integrated species distribution model. |
Koala |
Dataset of Eucalyptus globulus (common name: blue gum) sightings collected across the Koala conservation reserve on Phillip island (Australia) between 1993 and 2004. Two marks are considered from this dataset: "koala" which describes the number of koala visits to each tree, and "food" which is some index of the palatability of the leaves. |
makeLhoods |
_makeLhoods_: function to make likelihoods. |
nameChanger |
_nameChanger_: function to change a variable name. |
NLCD_canopy_raster |
Raster object containing the canopy cover across Pennsylvania state. |
Parks |
data.frame object containing solitary tinamou observations from Parks |
plot.bruSDM_predict |
Generic plot function for 'predict_bru_sdm'. |
predict.bruSDM |
Generic predict function for 'bru_SDM' objects. |
print.blockedCV |
Print function for 'blockedCV'. |
print.bruSDM |
Generic print function for 'bruSDM'. |
print.bruSDM_predict |
Generic print function for 'bru_sdm_predict'. |
print.datasetOut |
Generic print function for 'datasetOut'. |
region |
sf object containing the boundary region for solitary tinamouc |
runModel |
_runModel_: function used to run the integrated model. Note that this function is depreciated, and will be removed in a later version of the package. |
SetophagaData |
List of all data objects used for the Setophaga vignette. |
SolitaryTinamou |
List of all data objects used for the solitary tinamou vignette. |
SolTinCovariates |
spatRaster object containing covariate values |
summary.bruSDM |
Generic summary function for 'bruSDM'. |