as.toxEval |
toxEval helper functions |
clean_endPoint_info |
clean_endPoint_info |
create_toxEval |
Load and check toxEval data |
endpoint_hits |
Rank endpoints by category |
endpoint_hits_DT |
Rank endpoints by category |
end_point_info |
Endpoint information from ToxCast |
explore_endpoints |
Explore data in the Shiny Application |
filter_groups |
Filter endPoints based on groups and assays. |
get_ACC |
Get the ACC values for a selection of chemicals |
get_chemical_summary |
Compute EAR values |
get_concentration_summary |
Create concentration summary |
graph_chem_data |
Prepare boxplot data |
hits_by_groupings |
Biological hits per category |
hits_by_groupings_DT |
Biological hits per category |
hits_summary |
Summary of hits per site/category |
hits_summary_DT |
Summary of hits per site/category |
make_tox_map |
Create an interactive map of the data |
map_tox_data |
Create an interactive map of the data |
plot_chemical_boxplots |
Grouped Boxplots |
plot_tox_boxplots |
Grouped Boxplots |
plot_tox_endpoints |
EndPoint boxplots |
plot_tox_endpoints2 |
EndPoint boxplots with faceting option |
plot_tox_heatmap |
Plot EAR heat maps |
plot_tox_stacks |
Plot stacked bar charts |
rank_sites |
Rank sites by EAR |
rank_sites_DT |
Rank sites by EAR |
remove_flags |
Remove endpoints with specific data quality flags from data |
side_by_side_data |
Prepare boxplot data |
summary.toxEval |
Summary of tox_list |
ToxCast_ACC |
ACC values included with toxEval. |
tox_boxplot_data |
Prepare boxplot data |
tox_chemicals |
ToxCast Chemical Information |