Building and Training Neural Networks


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Documentation for package ‘cito’ version 1.1

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cito-package 'cito': Building and training neural networks
ALE Accumulated Local Effect Plot (ALE)
ALE.citodnn Accumulated Local Effect Plot (ALE)
ALE.citodnnBootstrap Accumulated Local Effect Plot (ALE)
analyze_training Visualize training of Neural Network
avgPool Average pooling layer
cito 'cito': Building and training neural networks
cnn CNN
coef.citocnn Returns list of parameters the neural network model currently has in use
coef.citodnn Returns list of parameters the neural network model currently has in use
coef.citodnnBootstrap Returns list of parameters the neural network model currently has in use
conditionalEffects Calculate average conditional effects
conditionalEffects.citodnn Calculate average conditional effects
conditionalEffects.citodnnBootstrap Calculate average conditional effects
config_lr_scheduler Creation of customized learning rate scheduler objects
config_optimizer Creation of customized optimizer objects
config_tuning Config hyperparameter tuning
continue_training Continues training of a model generated with 'dnn' or 'cnn' for additional epochs.
continue_training.citocnn Continues training of a model generated with 'dnn' or 'cnn' for additional epochs.
continue_training.citodnn Continues training of a model generated with 'dnn' or 'cnn' for additional epochs.
continue_training.citodnnBootstrap Continues training of a model generated with 'dnn' or 'cnn' for additional epochs.
conv Convolutional layer
create_architecture CNN architecture
dnn DNN
e Embeddings
findReTrmClasses list of specials - taken from enum.R
linear Linear layer
maxPool Maximum pooling layer
PDP Partial Dependence Plot (PDP)
PDP.citodnn Partial Dependence Plot (PDP)
PDP.citodnnBootstrap Partial Dependence Plot (PDP)
plot.citoarchitecture Plot the CNN architecture
plot.citocnn Plot the CNN architecture
plot.citodnn Creates graph plot which gives an overview of the network architecture.
plot.citodnnBootstrap Creates graph plot which gives an overview of the network architecture.
predict.citocnn Predict from a fitted cnn model
predict.citodnn Predict from a fitted dnn model
predict.citodnnBootstrap Predict from a fitted dnn model
print.avgPool Print pooling layer
print.citoarchitecture Print class citoarchitecture
print.citocnn Print class citocnn
print.citodnn Print class citodnn
print.citodnnBootstrap Print class citodnn
print.conditionalEffects Print average conditional effects
print.conditionalEffectsBootstrap Print average conditional effects
print.conv Print conv layer
print.linear Print linear layer
print.maxPool Print pooling layer
print.summary.citodnn Print method for class summary.citodnn
print.summary.citodnnBootstrap Print method for class summary.citodnn
print.transfer Print transfer model
residuals.citodnn Extract Model Residuals
simulate_shapes Data Simulation for CNN
summary.citocnn Summary citocnn
summary.citodnn Summarize Neural Network of class citodnn
summary.citodnnBootstrap Summarize Neural Network of class citodnn
sumTerms combine a list of formula terms as a sum
transfer Transfer learning
tune Tune hyperparameter