Predicts Oomycete Effectors

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Documentation for package ‘effectR’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

effectR-package	effectR: An R Package to Call Oomycete Effectors
candidate.rxlr	An example of 'effector.summary' output
effector.summary	Returns non-redundant sequences from hmm.search or regex.search and generates a motif table
effectR	effectR: An R Package to Call Oomycete Effectors
hmm.logo	Plots the relative frequencies of each position for 'hmmsearch' table.
hmm.search	Searching for motifs using HMM searches
regex.search	Searching for motifs using regular expressions (REGEX)
shiny.effectR	Function to run the effectR package using a shiny app