available_clinical_attributes |
Get all available clinical attribute IDs for a study |
available_gene_panels |
Get Available Gene Panels For a Database |
available_patients |
Get All Patient IDs in a Study |
available_profiles |
Get Available Genomic Profiles For a Study or Database |
available_samples |
Get All Sample IDs in a Study |
available_sample_lists |
Get All Sample Lists Available For a Study |
available_studies |
Get Metadata on All Available Studies in a Database |
get_alias |
Get Gene Name Alias for a Given Hugo Symbol |
get_cbioportal_token |
Get cBioPortal Access Token |
get_clinical_by_patient |
Get clinical data by attribute, study ID and patient ID |
get_clinical_by_sample |
Get clinical data by attribute, study ID and sample ID |
get_clinical_by_study |
Get all available clinical data for a specified study |
get_cna_by_sample |
Get CNA By Sample ID |
get_cna_by_study |
Get CNA By Study |
get_entrez_id |
Get Entrez Gene ID for a given set of Hugo Symbols |
get_fusions_by_sample |
Get Fusions By Sample ID |
get_fusions_by_study |
Get Fusions By Study |
get_genes |
Get A List of Genes for a Specified Database |
get_genetics_by_sample |
Get All Genomic Information By Sample IDs |
get_genetics_by_study |
Get All Genomic Information By Study |
get_gene_panel |
Retrieve Genes Included For a Specified Panel ID |
get_hugo_symbol |
Get Hugo Symbol for a given set of Entrez IDs |
get_mutations_by_sample |
Get Mutations By Sample ID |
get_mutations_by_study |
Get Mutations By Study ID |
get_panel_by_sample |
Get Gene Panel by study ID and sample ID |
get_samples_by_patient |
Get sample IDs for a given set of patient IDs |
get_segments_by_sample |
Get Copy Number Segmentation Data By Sample ID |
get_segments_by_study |
Get Copy Number Segmentation Data By Study |
get_structural_variants_by_sample |
Get Fusions By Sample ID |
get_structural_variants_by_study |
Get Fusions By Study |
get_study_info |
Get Metadata on All Available Studies in Database or a Specified Study |
impact_gene_info |
IMPACT Gene Meta Data |
set_cbioportal_db |
Connect to cBioPortal DB |
test_cbioportal_db |
Test the Database Connection Anytime During your R Session |