Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data

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Documentation for package ‘EEM’ version 1.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

EEM-package	EEM: A package for reading and preprocessing fluorescence excitation-emission matrix
applejuice	Apple juice
commonizeEEM	Smooth out the different dimensions of EEM data
cutEEM	Cut portions of EEM
cutEEM.EEM	Cut portions of EEM
cutEEM.EEMweight	Cut portions of EEM
delScattering	Delete scattering rays
delScattering2	Delete scattering rays
drawEEM	Draw contour for EEM data
drawEEM.data.frame	Draw contour for EEM data
drawEEM.EEM	Draw contour for EEM data
drawEEM.EEMweight	Draw contour for EEM data
drawEEM.matrix	Draw contour for EEM data
drawEEM.numeric	Draw contour for EEM data
drawEEMgg	Draw contour for EEM data using ggplot2
drawEEMgg.EEM	Draw contour for EEM data using ggplot2
drawEEMgg.EEMweight	Draw contour for EEM data using ggplot2
drawEEMgg_internal	Draw contour for EEM data using ggplot2
EEM	EEM: A package for reading and preprocessing fluorescence excitation-emission matrix
EEM-misc	Internal functions for EEM package
extract	Extract values from other models
findLocalMax	Find local maximum peaks
findLocalMax.EEM	Find local maximum peaks
findLocalMax.matrix	Find local maximum peaks
findLocalMax.numeric	Find local maximum peaks
fold	Fold EEM matrix into a list
fold.data.frame	Fold EEM matrix into a list
fold.matrix	Fold EEM matrix into a list
fold.numeric	Fold EEM matrix into a list
generateColor	Internal functions for EEM package
generatePoint	Internal functions for EEM package
getEM	Internal functions for EEM package
getEX	Internal functions for EEM package
getLoading	Extract values from other models
getReg	Extract values from other models
gluten	Gluten
normalize	Normalize data
plotLoading	Plot loadings for EEM data
plotReg	Plot regression coefficients for EEM data
plotScore	Plot score for prcomp result
plotScorem	Plot score matrix for prcomp result based on group
prcompname	Create name for prcomp result
print.EEM	Print EEM
readEEM	Read raw files and return a list
summary.EEM	SummarizeEEM EEM list
unfold	Unfold EEM list into a matrix
[.EEM	Subset EEM list