Reproduce Statistical Analyses and Meta-Analyses

Documentation for package ‘reproducer’ version 0.5.3

Help Pages

-- A --

aggregateIndividualDocumentStatistics	aggregateIndividualDocumentStatistics
AnalyseResiduals	AnalyseResiduals

-- B --

boxplotAndDensityCurveOnHistogram	boxplotAndDensityCurveOnHistogram
boxplotHV	boxplotHV

-- C --

calc.a	calc.a
calc.b	calc.b
Calc4GroupNPStats	Calc4GroupNPStats
calcCliffdConfidenceIntervals	calcCliffdConfidenceIntervals
calcCliffdTestStatistics	calcCliffdTestStatistics
calcEffectSizeConfidenceIntervals	calcEffectSizeConfidenceIntervals
calcPHatConfidenceIntervals	calcPHatConfidenceIntervals
calcPHatMATestStatistics	calcPHatMATestStatistics
calculate2GBias	calculate2GBias
calculate2GType1Error	calculate2GType1Error
calculate4GBias	calculate4GBias
calculate4GType1Error	calculate4GType1Error
calculateBasicStatistics	calculateBasicStatistics
calculateCliffd	calculateCliffd
calculateGroupSummaryStatistics	calculateGroupSummaryStatistics
calculateHg	calculateHg
calculateKendalltaupb	@title calculateKendalltaupb @description Computes point bi-serial version of Kendall's tau plus a 1-alpha confidence interval using the method recommended by Long and Cliff (1997). The algorithm is based on Wilcox's code but was extended to return the consistent variance and the confidence intervals based on the t-distribution. Also added a Diagnostic parameter to output internal calculations.
calculateLargeSampleRandomizedBlockDesignEffectSizes	calculateLargeSampleRandomizedBlockDesignEffectSizes
calculateLargeSampleRandomizedDesignEffectSizes	calculateLargeSampleRandomizedDesignEffectSizes
CalculateLevel2ExperimentRData	CalculateLevel2ExperimentRData
calculateMABias	calculateMABias
calculateMAType1Error	calculateMAType1Error
calculateNullESAccuracy	calculateNullESAccuracy
calculatePhat	calculatePhat
calculatePopulationStatistics	calculatePopulationStatistics
CalculateRLevel1	CalculateRLevel1
calculateSmallSampleSizeAdjustment	calculateSmallSampleSizeAdjustment
CatchError	CatchError
checkIfValidDummyVariable	checkIfValidDummyVariable
Ciolkowski09ESEM.MetaAnalysis.PBRvsCBRorAR	Ciolkowski09ESEM.MetaAnalysis.PBRvsCBRorAR data
Cliffd.test	Cliffd.test
constructEffectSizes	constructEffectSizes
ConstructLevel1ExperimentRData	ConstructLevel1ExperimentRData
crossoverResidualAnalysis	crossoverResidualAnalysis

-- D --

densityCurveOnHistogram	densityCurveOnHistogram
doLM	doLM

-- E --

effectSizeCI	effectSizeCI
ExtractExperimentData	ExtractExperimentData
ExtractGroupSizeData	ExtractGroupSizeData
ExtractMAStatistics	ExtractMAStatistics
ExtractSummaryStatisticsRandomizedExp	ExtractSummaryStatisticsRandomizedExp

-- F --

fmt

-- G --

getEffectSizesABBA	getEffectSizesABBA
getEffectSizesABBAIgnoringPeriodEffect	getEffectSizesABBAIgnoringPeriodEffect
getSimulationData	getSimulationData
getTheoreticalEffectSizeVariancesABBA	getTheoreticalEffectSizeVariancesABBA

-- K --

-- L --

LaplaceDist

-- M --

Madeyski15EISEJ.OpenProjects	Madeyski15EISEJ.OpenProjects data
Madeyski15EISEJ.PropProjects	Madeyski15EISEJ.PropProjects data
Madeyski15EISEJ.StudProjects	Madeyski15EISEJ.StudProjects data
Madeyski15SQJ.NDC	Madeyski15SQJ.NDC data
MadeyskiKitchenham.EUBASdata	MadeyskiKitchenham.EUBASdata data
MadeyskiKitchenham.MetaAnalysis.PBRvsCBRorAR	MadeyskiKitchenham.MetaAnalysis.PBRvsCBRorAR data
MadeyskiLewowski.IndustryRelevantGitHubJavaProjects20190324	MadeyskiLewowski.IndustryRelevantGitHubJavaProjects20190324 data
MadeyskiLewowski.IndustryRelevantGitHubJavaProjects20191022	MadeyskiLewowski.IndustryRelevantGitHubJavaProjects20191022 data
metaanalyse.Cliffd	metaanalyse.Cliffd
metaanalyse.PHat	metaanalyse.PHat
metaanalyseSmallSampleSizeExperiments	metaanalyseSmallSampleSizeExperiments
MetaAnalysisSimulations	MetaAnalysisSimulations

-- N --

NP2GMetaAnalysisSimulation	NP2GMetaAnalysisSimulation
NP4GMetaAnalysisSimulation	NP4GMetaAnalysisSimulation

-- P --

percentageInaccuracyOfLargeSampleVarianceApproximation	percentageInaccuracyOfLargeSampleVarianceApproximation
PHat.test	PHat.test
PHatonesidedTestStatistics	PHatonesidedTestStatistics
PHattwosidedTestStatistics	PHattwosidedTestStatistics
plotOutcomesForIndividualsInEachSequenceGroup	plotOutcomesForIndividualsInEachSequenceGroup
PrepareForMetaAnalysisGtoR	PrepareForMetaAnalysisGtoR
printXTable	printXTable
proportionOfSignificantTValuesUsingCorrectAnalysis	proportionOfSignificantTValuesUsingCorrectAnalysis
proportionOfSignificantTValuesUsingIncorrectAnalysis	proportionOfSignificantTValuesUsingIncorrectAnalysis

-- R --

-- S --

searchForIndustryRelevantGitHubProjects	searchForIndustryRelevantGitHubProjects
simulate2GExperimentData	simulate2GExperimentData
simulate4GExperimentData	simulate4GExperimentData
simulateRandomizedBlockDesignEffectSizes	simulateRandomizedBlockDesignEffectSizes
simulateRandomizedDesignEffectSizes	simulateRandomizedDesignEffectSizes

-- T --

testfunctionParameterChecks	testfunctionParameterChecks
transformHgtoR	transformHgtoR
transformHgtoZr	transformHgtoZr
transformRtoHg	transformRtoHg
transformRtoZr	transformRtoZr
transformZrtoHg	transformZrtoHg
transformZrtoHgapprox	transformZrtoHgapprox
transformZrtoR	transformZrtoR

-- V --

varStandardizedEffectSize

KitchenhamEtAl.CorrelationsAmongParticipants.Abrahao13TSE	KitchenhamEtAl.CorrelationsAmongParticipants.Abrahao13TSE data
KitchenhamEtAl.CorrelationsAmongParticipants.Gravino15JVLC	KitchenhamEtAl.CorrelationsAmongParticipants.Gravino15JVLC data
KitchenhamEtAl.CorrelationsAmongParticipants.Madeyski10	KitchenhamEtAl.CorrelationsAmongParticipants.Madeyski10 data
KitchenhamEtAl.CorrelationsAmongParticipants.Reggio15SSM	KitchenhamEtAl.CorrelationsAmongParticipants.Reggio15SSM data
KitchenhamEtAl.CorrelationsAmongParticipants.Ricca10TSE	KitchenhamEtAl.CorrelationsAmongParticipants.Ricca10TSE data
KitchenhamEtAl.CorrelationsAmongParticipants.Ricca14TOSEM	KitchenhamEtAl.CorrelationsAmongParticipants.Ricca14TOSEM data
KitchenhamEtAl.CorrelationsAmongParticipants.Romano18ESEM	KitchenhamEtAl.CorrelationsAmongParticipants.Romano18ESEM data
KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14EASE	KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14EASE data
KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14JVLC	KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14JVLC data
KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14TOSEM	KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14TOSEM data
KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello15EMSE	KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello15EMSE data
KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello17TOSEM	KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello17TOSEM data
KitchenhamEtAl.CorrelationsAmongParticipants.Torchiano17JVLC	KitchenhamEtAl.CorrelationsAmongParticipants.Torchiano17JVLC data
KitchenhamMadeyski.SimulatedCrossoverDataSets	KitchenhamMadeyski.SimulatedCrossoverDataSets data
KitchenhamMadeyskiBrereton.ABBAMetaAnalysisReportedResults	KitchenhamMadeyskiBrereton.ABBAMetaAnalysisReportedResults data
KitchenhamMadeyskiBrereton.ABBAReportedEffectSizes	KitchenhamMadeyskiBrereton.ABBAReportedEffectSizes data
KitchenhamMadeyskiBrereton.DocData	KitchenhamMadeyskiBrereton.DocData data
KitchenhamMadeyskiBrereton.ExpData	KitchenhamMadeyskiBrereton.ExpData data
KitchenhamMadeyskiBrereton.MetaAnalysisReportedResults	KitchenhamMadeyskiBrereton.MetaAnalysisReportedResults data
KitchenhamMadeyskiBrereton.ReportedEffectSizes	KitchenhamMadeyskiBrereton.ReportedEffectSizes data
KitchenhamMadeyskiBudgen16.COCOMO	KitchenhamMadeyskiBudgen16.COCOMO data
KitchenhamMadeyskiBudgen16.DiffInDiffData	KitchenhamMadeyskiBudgen16.DiffInDiffData data
KitchenhamMadeyskiBudgen16.FINNISH	KitchenhamMadeyskiBudgen16.FINNISH data
KitchenhamMadeyskiBudgen16.PolishData	KitchenhamMadeyskiBudgen16.PolishData data
KitchenhamMadeyskiBudgen16.PolishSubjects	KitchenhamMadeyskiBudgen16.PolishSubjects data
KitchenhamMadeyskiBudgen16.SubjectData	KitchenhamMadeyskiBudgen16.SubjectData

RandomExperimentSimulations	RandomExperimentSimulations
RandomizedBlockDesignEffectSizes	RandomizedBlockDesignEffectSizes
RandomizedBlocksAnalysis	RandomizedBlocksAnalysis
RandomizedBlocksExperimentSimulations	title RandomizedBlocksExperimentSimulations description This function performs multiple simulations of 4 group balanced randomised Block experiments with two control groups and two treatment groups where one control group and one treatment group are assigned to block 1 and the other control group and treatment group are assigned to block 2. The simulations are based on one of four distributions and a specific group size. The function identifies the average value of the non-parametric effect sizes P-hat, Cliff' d and their variances and whether ot not the statistics were significant at the 0.05 level. We also present the values of the t-test as a comparison.
RandomizedDesignEffectSizes	RandomizedDesignEffectSizes
readExcelSheet	readExcelSheet
reproduceForestPlotRandomEffects	reproduceForestPlotRandomEffects()
reproduceMixedEffectsAnalysisWithEstimatedVarianceAndExperimentalDesignModerator	reproduceMixedEffectsAnalysisWithEstimatedVarianceAndExperimentalDesignModerator()
reproduceMixedEffectsAnalysisWithExperimentalDesignModerator	reproduceMixedEffectsAnalysisWithExperimentalDesignModerator()
reproduceMixedEffectsForestPlotWithExperimentalDesignModerator	reproduceMixedEffectsForestPlotWithExperimentalDesignModerator()
reproduceSimulationResultsBasedOn500Reps1000Obs	reproduceSimulationResultsBasedOn500Reps1000Obs
reproduceTablesOfPaperMetaAnalysisForFamiliesOfExperiments	reproduceTablesOfPaperMetaAnalysisForFamiliesOfExperiments
reproduceTableWithEffectSizesBasedOnMeanDifferences	reproduceTableWithEffectSizesBasedOnMeanDifferences()
reproduceTableWithPossibleModeratingFactors	reproduceTableWithPossibleModeratingFactors()
reproduceTableWithSourceDataByCiolkowski	reproduceTableWithSourceDataByCiolkowski
rSimulations	rSimulations