Searching Shared HLA Amino Acid Residue Prevalence

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Documentation for package ‘SSHAARP’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

AA_atlas	Exon boundaries for all exons in protein coding genes in the IPD-IMGT/HLA Database release v 3.39.0
BLAASD	BLAASD - Build Loci Amino Acid Specific Dataframe
checkMotif	Syntactic and semantic validation of HLA amino acid motifs
dataSubset	Solberg dataset manipulation
findMotif	Returns an alignment data frame of alleles that share a specific amino acid motif
IMGTprotalignments	Protein alignments for all protein coding genes in the IPD-IMGT/HLA Database release v 3.39.0.
PALM	Population Allele Locating Mapmaker
solberg_dataset	Solberg Dataset