batchmix-package |
Bayesian Mixture Modelling for Joint Model-Based Clustering/Classification and Batch Correction |
batchmix |
Bayesian Mixture Modelling for Joint Model-Based Clustering/Classification and Batch Correction |
batchSemiSupervisedMixtureModel |
Batch semisupervised mixture model |
calcAllocProb |
Calculate allocation probabilities |
checkDataGenerationInputs |
Check data generation inputs |
checkProposalWindows |
Check proposal windows |
collectAcceptanceRates |
Collect acceptance rate |
continueChain |
Continue chain |
continueChains |
Continue chains |
createSimilarityMat |
Create Similarity Matrix |
gammaLogLikelihood |
Gamma log-likelihood |
generateBatchData |
Generate batch data |
generateBatchDataLogPoisson |
Generate batch data |
generateBatchDataMVT |
Generate batch data from a multivariate t distribution |
generateBatchDataVaryingRepresentation |
Generate batch data |
generateGroupIDsInSimulator |
Generate group IDs |
generateInitialLabels |
Generate initial labels |
getLikelihood |
Get likelihood |
getSampledBatchScale |
Get sampled batch shift |
getSampledBatchShift |
Get sampled batch shift |
getSampledClusterMeans |
Get sampled cluster means |
invGammaLogLikelihood |
Inverse gamma log-likelihood |
invWishartLogLikelihood |
Inverse-Wishart log-likelihood |
minVI |
Minimium VI |
plotAcceptanceRates |
Plot acceptance rates |
plotLikelihoods |
Plot likelihoods |
plotSampledBatchMeans |
Plot sampled batch means |
plotSampledBatchScales |
Plot sampled batch scales |
plotSampledClusterMeans |
Plot sampled cluster means |
plotSampledParameter |
Plot sampled vector parameter |
predictClass |
Predict class |
predictFromMultipleChains |
Predict from multiple MCMC chains |
prepareInitialParameters |
Prepare initial values |
processMCMCChain |
Process MCMC chain |
processMCMCChains |
Process MCMC chains |
rStickBreakingPrior |
Random Draw From Stick Breaking Prior |
runBatchMix |
Run Batch Mixture Model |
runMCMCChains |
Run MCMC Chains |
sampleMVN |
Sample mixture of multivariate normal distributions with batch effects |
sampleMVT |
Sample mixture of multivariate t-distributions with batch effects |
samplePriorLabels |
Sample prior labels |
sampleSemisupervisedMVN |
Sample semi-supervised MVN Mixture model |
sampleSemisupervisedMVT |
Sample semi-supervised MVT Mixture model |
VI.lb |
Minimum VI lower bound |
wishartLogLikelihood |
Wishart log-likelihood |