Pre-process DNA Copy Number (CN) Data for Detection of CN Events


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Documentation for package ‘CNprep’ version 2.0

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annotexample Annotation table for ROMA CGH platform and human genome version 17.
applyCNPmask Apply a mask to a table of copy number events.
cnpexample Example of a boundary positions table.
CNpreprocessing Pre-process DNA copy number (CN) data for detection of CN events.
makeCNPmask Given a set of copy-number events, create a DNA copy-number mask
normsegs A reference set of segments
ratexample Example of copy number log ratio data
segexample Example of a segmented copy number table.