affinityMatrix |
Affinity matrix calculation |
calNMI |
Mutual Information calculation |
chiDist2 |
Pairwise Chi-squared distances |
concordanceNetworkNMI |
Concordance Network NMI calculation |
Data1 |
Data1 |
Data2 |
Data2 |
dataL |
dataL |
displayClusters |
Plot given similarity matrix by clusters |
displayClustersWithHeatmap |
Display the similarity matrix by clusters with some sample information |
dist2 |
Pairwise squared Euclidean distances |
estimateNumberOfClustersGivenGraph |
Estimate Number Of Clusters Given Graph |
getColorsForGroups |
Obtaining a vector of colors from a numeric vector of group |
groupPredict |
Group Predict |
heatmapPlus |
Display heatmap for clusters |
label |
Labels for dataL dataset |
plotAlluvial |
Plot Alluvial |
rankFeaturesByNMI |
Rank Features by NMI |
SNF |
Similarity Network Fusion |
spectralClustering |
Spectral Clustering |
standardNormalization |
Standard Normalization |