%||% |
geom_flat_violin_HELPER1 |
baseline_data |
Baseline pupil data to the average pupil size within a window |
calculate_mean_pupil_size |
Calculate a mean size across two pupils over time |
calculate_missing_data |
Calculate the missing data amount |
clean_missing_data |
Clean missing data above an acceptable threshold |
create_difference_data |
Create a difference data frame when dealing with a condition column with 2 levels |
create_functional_data |
Makes a functional data with splines from a Pupil_difference_data dataframe. |
create_time_windows |
Make PupillometryR dataframe into multiple time windows for easy analysis |
create_window_data |
Make PupillometryR dataframe into a single collapsed window for easy analysis |
detect_blinks_by_column |
detect blinks by a pre-existing labelled blink column that comes from the eyetracker |
detect_blinks_by_size |
detect blinks by a change in pupil size |
detect_blinks_by_velocity |
detect blinks by a change in velocity |
downsample_time_data |
Downsample frequency to reduce number of samples and data size |
filter_data |
Run a filter on the data to smooth it out. |
GeomFlatViolin |
geom_flat_violin_HELPER2 |
geom_flat_violin |
ggplot Flat Violin |
gfv_helper1 |
geom_flat_violin_HELPER1 |
interpolate_data |
Interpolate across the gaps in data |
make_pupillometryr_data |
Prepare data for pre-processing in PupillometryR |
mean2 |
Helper function mean2 |
plot.PupillometryR |
Pre-prepared plots of PupillometryR data |
plot.Pupil_difference_data |
Pre-prepared plots of PupillometryR data |
plot.Pupil_test_data |
Pre-prepared plots of PupillometryR data |
plot.Pupil_window_data |
Pre-prepared plots of PupillometryR data |
pupil_data |
Data collected in a pupillometry study by Sylvain Sirois |
regress_data |
Regress one pupil against another for extra smoothing |
replace_missing_data |
replaces missing observations if you have some degree of incomplete observations |
run_functional_t_test |
Run a functional t-test on a dataframe previously fitted with b-splines. |
subset_data |
Subset data to provide start and finish time windows |