Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory

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Documentation for package ‘SubpathwayLNCE’ version 1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

envData	The variables in the environment variable 'envData' of the system
getBackgroundLnc	Get the background of molecules
GetExampleData	Get the environment data
getInteGraphList	Get the reconstructed signal pathway graphs
getInteUMGraph	Get the reconstructed condition-specific lncRNA-regulated signal pathways
getLncGenePairs	Get the co-express lncRNA-mRNA interactions
getLocSubGraphLnc	Get the located signal subpathways
identifyLncGraphW	Annotate and identify subpathways
plotAnnGraph	Visualize annotated pathway graphs
plotGraphL	Visualize a pathway graph
printGraphW	Print the results of graph annotation and identification