Analysis of Plant Pathogen Pathotype Complexities, Distributions
and Diversity
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Documentation for package ‘hagis’ version 3.1.11
Help Pages
| autoplot.hagis.complexities | Plot hagis Complexities Objects |
| autoplot.hagis.gene.summary | Plot hagis Summary Objects |
| calculate_complexities | Calculate Distribution of Complexities by Sample |
| calculate_diversities | Calculate Diversities Indices |
| create_binary_matrix | Create Binary Data Matrix From Pathotype Data |
| diversities_table | Custom Print for hagis Diversities Tables |
| individual_pathotypes | Prints Individual Pathotypes for Each Sample |
| P_sojae_survey | _Phytophthora sojae_ Survey Example Data |
| sample_meta | _Phytophthora sojae_ Survey Example Metadata |
| summarize_gene | Calculate and Summarize Distribution of Susceptibilities by Gene |