Joint Species Distribution Models

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Documentation for package ‘jSDM’ version 0.2.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

jSDM-package	joint species distribution models
aravo	Distribution of Alpine plants in Aravo (Valloire, France)
birds	birds dataset
eucalypts	eucalypts dataset
frogs	frogs dataset
fungi	fungi dataset
get_enviro_cor	Extract covariances and correlations due to shared environmental responses
get_residual_cor	Calculate the residual correlation matrix from a latent variable model (LVM)
inv_logit	Generalized inverse logit function
jSDM_binomial_logit	Binomial logistic regression
jSDM_binomial_probit	Binomial probit regression
jSDM_binomial_probit_long_format	Binomial probit regression on long format data
jSDM_binomial_probit_sp_constrained	Binomial probit regression with selected constrained species
jSDM_gaussian	Binomial probit regression
jSDM_poisson_log	Poisson regression with log link function
logit	Generalized logit function
madagascar	Madagascar's forest inventory
mites	mites dataset
mosquitos	mosquitos dataset
plot_associations	plot_associations plot species-species associations
plot_residual_cor	Plot the residual correlation matrix from a latent variable model (LVM).
predict.jSDM	Predict method for models fitted with jSDM