jSDM-package |
joint species distribution models |
aravo |
Distribution of Alpine plants in Aravo (Valloire, France) |
birds |
birds dataset |
eucalypts |
eucalypts dataset |
frogs |
frogs dataset |
fungi |
fungi dataset |
get_enviro_cor |
Extract covariances and correlations due to shared environmental responses |
get_residual_cor |
Calculate the residual correlation matrix from a latent variable model (LVM) |
inv_logit |
Generalized inverse logit function |
jSDM_binomial_logit |
Binomial logistic regression |
jSDM_binomial_probit |
Binomial probit regression |
jSDM_binomial_probit_long_format |
Binomial probit regression on long format data |
jSDM_binomial_probit_sp_constrained |
Binomial probit regression with selected constrained species |
jSDM_gaussian |
Binomial probit regression |
jSDM_poisson_log |
Poisson regression with log link function |
logit |
Generalized logit function |
madagascar |
Madagascar's forest inventory |
mites |
mites dataset |
mosquitos |
mosquitos dataset |
plot_associations |
plot_associations plot species-species associations |
plot_residual_cor |
Plot the residual correlation matrix from a latent variable model (LVM). |
predict.jSDM |
Predict method for models fitted with jSDM |