Analysis of Coarsely Observed Data

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Documentation for package ‘coarseDataTools’ version 0.6-6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cd.fit	An S4 Class that stores a fitted coarse data object
cd.fit-class	An S4 Class that stores a fitted coarse data object
cd.fit.mcmc	An S4 Class that stores a MCMC fit coarse data object
cd.fit.mcmc-class	An S4 Class that stores a MCMC fit coarse data object
dgammaOff1	Function that calculates dgamma with a offset of 1 (i.e., 1 is equivalent to 0)
dic.fit	censored survival data
dic.fit.mcmc	Fits the distribution to the passed-in data using MCMC as implemented in MCMCpack.
EMforCFR	A function to estimate the relative case fatality ratio when reporting rates are time-varying and deaths are lagged because of survival time.
exp.win.lengths	Exposure window lengths from an influenza outbreak at a NYC school
fluA.inc.per	Coarse incubation period data for influenza A
generate.coarse.data	Simulate incubation period analyses with coarse data
get.obs.type	Tries to guess the observation types (SIC, DIC, or exact).
logLik	Get the log-likelihood value of a 'cd.fit' or 'cd.fit.mcmc' object
logLik-method	Get the log-likelihood value of a 'cd.fit' or 'cd.fit.mcmc' object
loglikhd	Negative log likelihood for a dataset of interval-censored data, given a distribution and its parameters.
mcmc.erlang	Does a metropolis hastings for the Erlang distribution
mcmcpack.ll	posterior log likelihood function to pass to MCMCpack sampler
nycH1N1	Incubation period data from New York City Public Schools, 2009 H1N1 influenza outbreak
pgammaOff1	Function that calculates pgamma with a offset of 1 (i.e., 1 is equivalent to 0)
precision.simulation	Simulate incubation period analyses with coarse data
precision.simulation.coarse	Simulate incubation period analyses with coarse data
precision.simulation.exact	Simulate incubation period analyses with coarse data
simulated.outbreak.deaths	Simulated case and death reports from a fictional outbreak